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Vanadium in PDB 9e9u: Vanadate-Bound Putative Ancestral Protein Tyrosine Phosphatase Shufptp - Highest P-Loop Conformation

Protein crystallography data

The structure of Vanadate-Bound Putative Ancestral Protein Tyrosine Phosphatase Shufptp - Highest P-Loop Conformation, PDB code: 9e9u was solved by J.M.Denson, R.Shen, A.C.Hengge, S.J.Johnson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.26 / 1.80
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 86.05, 86.05, 32.225, 90, 90, 120
R / Rfree (%) 17.8 / 21.4

Vanadium Binding Sites:

The binding sites of Vanadium atom in the Vanadate-Bound Putative Ancestral Protein Tyrosine Phosphatase Shufptp - Highest P-Loop Conformation (pdb code 9e9u). This binding sites where shown within 5.0 Angstroms radius around Vanadium atom.
In total only one binding site of Vanadium was determined in the Vanadate-Bound Putative Ancestral Protein Tyrosine Phosphatase Shufptp - Highest P-Loop Conformation, PDB code: 9e9u:

Vanadium binding site 1 out of 1 in 9e9u

Go back to Vanadium Binding Sites List in 9e9u
Vanadium binding site 1 out of 1 in the Vanadate-Bound Putative Ancestral Protein Tyrosine Phosphatase Shufptp - Highest P-Loop Conformation


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 1 of Vanadate-Bound Putative Ancestral Protein Tyrosine Phosphatase Shufptp - Highest P-Loop Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:V201

b:54.4
occ:1.00
V A:VO4201 0.0 54.4 1.0
O1 A:VO4201 1.9 42.4 1.0
O3 A:VO4201 1.9 30.5 1.0
O4 A:VO4201 1.9 27.2 1.0
O2 A:VO4201 1.9 41.3 1.0
NE A:ARG99 3.5 28.0 1.0
NH2 A:ARG99 3.9 31.7 1.0
N A:GLY98 4.0 25.4 1.0
OE1 A:GLU132 4.1 47.7 1.0
CA A:GLY98 4.1 26.6 1.0
CZ A:ARG99 4.1 31.8 1.0
N A:ARG99 4.1 22.0 1.0
N A:PHE64 4.3 33.7 1.0
CG A:ARG99 4.3 26.6 1.0
CD A:ARG99 4.3 26.7 1.0
CD A:GLU132 4.5 44.5 1.0
OD2 A:CSO93 4.6 22.9 0.5
C A:GLY98 4.6 22.2 1.0
CD1 A:PHE64 4.7 37.0 1.0
OD1 A:CSO93 4.7 29.3 0.5
CA A:PHE64 4.7 36.0 1.0
NE2 A:GLN136 4.7 26.4 1.0
OE2 A:GLU132 4.7 47.7 1.0
CE1 A:PHE64 4.7 38.5 1.0
CA A:GLY96 4.8 38.4 1.0
N A:GLY96 4.8 39.1 1.0
C A:GLY96 4.9 36.2 1.0
CB A:ARG99 4.9 22.6 1.0
N A:LEU97 5.0 33.9 1.0

Reference:

R.Shen, J.M.Denson, A.C.Hengge, S.J.Johnson. A Putative Ancestral Protein Tyrosine Phosphatase Probes the Evolutionary Origin of Ptp Loop Motions To Be Published.
Page generated: Sun Dec 15 11:52:58 2024

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