Vanadium in PDB 8vix: Hydrogen Peroxide-Bound Vanadium-Dependent Bromoperoxidase From Corallina Pilulifera

All present enzymatic activity of Hydrogen Peroxide-Bound Vanadium-Dependent Bromoperoxidase From Corallina Pilulifera:
1.11.1.18;

The structure of Hydrogen Peroxide-Bound Vanadium-Dependent Bromoperoxidase From Corallina Pilulifera also contains other interesting chemical elements:

Calcium

(Ca)

2 atoms

The binding sites of Vanadium atom in the Hydrogen Peroxide-Bound Vanadium-Dependent Bromoperoxidase From Corallina Pilulifera (pdb code 8vix). This binding sites where shown within 5.0 Angstroms radius around Vanadium atom.
In total 2 binding sites of Vanadium where determined in the Hydrogen Peroxide-Bound Vanadium-Dependent Bromoperoxidase From Corallina Pilulifera, PDB code: 8vix:
Jump to Vanadium binding site number: 1; 2;

Vanadium binding site 1 out of 2 in the Hydrogen Peroxide-Bound Vanadium-Dependent Bromoperoxidase From Corallina Pilulifera


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 1 of Hydrogen Peroxide-Bound Vanadium-Dependent Bromoperoxidase From Corallina Pilulifera within 5.0Å range: probe atom residue distance (Å) B Occ A:V601 b:2.3 occ:1.00 V A:VO4601 0.0 2.3 1.0 O3 A:VO4601 1.5 2.6 1.0 O2 A:VO4601 1.7 5.7 1.0 O1 A:VO4601 1.7 2.9 1.0 O4 A:VO4601 1.8 30.0 1.0 NE2 A:HIS553 1.9 4.5 1.0 CE1 A:HIS553 2.8 0.1 1.0 CD2 A:HIS553 3.0 5.1 1.0 N A:GLY486 3.5 3.4 1.0 OG A:SER485 3.6 5.8 1.0 CE1 A:HIS480 3.7 2.8 1.0 NH2 A:ARG547 3.7 5.9 1.0 NH2 A:ARG408 3.8 8.8 1.0 NZ A:LYS400 3.9 2.8 1.0 ND1 A:HIS553 4.0 2.1 1.0 O A:HOH703 4.0 30.0 1.0 CA A:SER485 4.0 4.9 1.0 NH1 A:ARG408 4.0 1.2 1.0 NE A:ARG547 4.0 7.4 1.0 CG A:HIS553 4.1 1.9 1.0 ND1 A:HIS487 4.1 2.6 1.0 O1 A:PER602 4.1 20.0 1.0 N A:HIS487 4.1 7.3 1.0 C A:SER485 4.2 1.4 1.0 CZ A:ARG547 4.3 9.0 1.0 CB A:SER485 4.3 4.3 1.0 O2 A:PER602 4.4 20.0 1.0 CA A:GLY486 4.4 1.6 1.0 CZ A:ARG408 4.4 4.1 1.0 ND1 A:HIS480 4.5 2.2 1.0 NE2 A:HIS480 4.6 2.3 1.0 CG A:PRO478 4.7 13.1 1.0 CE A:LYS400 4.8 3.6 1.0 C A:GLY486 4.8 7.4 1.0 CG A:HIS487 4.9 9.3 1.0 CB A:HIS487 4.9 4.4 1.0 CE1 A:HIS487 4.9 7.6 1.0 O A:GLY484 4.9 5.1 1.0 CD A:PRO478 4.9 21.3 1.0

Vanadium binding site 2 out of 2 in the Hydrogen Peroxide-Bound Vanadium-Dependent Bromoperoxidase From Corallina Pilulifera


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 2 of Hydrogen Peroxide-Bound Vanadium-Dependent Bromoperoxidase From Corallina Pilulifera within 5.0Å range: probe atom residue distance (Å) B Occ B:V602 b:3.9 occ:1.00 V B:VO4602 0.0 3.9 1.0 O3 B:VO4602 1.6 3.8 1.0 O1 B:VO4602 1.7 0.9 1.0 O2 B:VO4602 1.7 1.9 1.0 O4 B:VO4602 1.8 30.0 1.0 NE2 B:HIS553 1.9 5.3 1.0 CD2 B:HIS553 2.9 7.8 1.0 CE1 B:HIS553 2.9 1.2 1.0 OG B:SER485 3.5 4.4 1.0 N B:GLY486 3.6 6.8 1.0 NH2 B:ARG547 3.6 9.1 1.0 NE B:ARG547 3.8 4.8 1.0 CE1 B:HIS480 3.9 7.4 1.0 O1 B:PER603 3.9 20.0 1.0 NH2 B:ARG408 3.9 6.9 1.0 ND1 B:HIS487 4.0 7.5 1.0 N B:HIS487 4.0 3.6 1.0 ND1 B:HIS553 4.0 6.6 1.0 CG B:HIS553 4.0 2.5 1.0 CA B:SER485 4.0 3.0 1.0 O B:HOH702 4.1 30.0 1.0 CZ B:ARG547 4.1 6.2 1.0 NH1 B:ARG408 4.1 6.0 1.0 NZ B:LYS400 4.2 5.8 1.0 CB B:SER485 4.2 0.0 1.0 C B:SER485 4.2 8.6 1.0 O2 B:PER603 4.3 20.0 1.0 CA B:GLY486 4.4 9.7 1.0 CZ B:ARG408 4.5 8.9 1.0 CG B:PRO478 4.6 5.3 1.0 ND1 B:HIS480 4.7 5.6 1.0 CB B:HIS487 4.7 2.9 1.0 C B:GLY486 4.7 6.2 1.0 CG B:HIS487 4.8 0.4 1.0 NE2 B:HIS480 4.9 9.8 1.0 CE1 B:HIS487 4.9 7.6 1.0 CD B:PRO478 4.9 5.2 1.0 CD B:ARG547 4.9 9.2 1.0 CG2 B:VAL552 4.9 8.3 1.0 CE B:LYS400 5.0 3.4 1.0 CA B:HIS487 5.0 7.8 1.0

L.Z.Hessefort, D.R.Williams, K.F.Biegasiewicz. High-Resolution Cryoem Unveils Insights Into the Catalytic Mechanism of A Vanadium-Dependent Bromoperoxidase To Be Published.