Vanadium in PDB 8vh0: Vanadate-Bound Vanadium-Dependent Bromoperoxidase From Corallina Pilulifera

All present enzymatic activity of Vanadate-Bound Vanadium-Dependent Bromoperoxidase From Corallina Pilulifera:
1.11.1.18;

The structure of Vanadate-Bound Vanadium-Dependent Bromoperoxidase From Corallina Pilulifera also contains other interesting chemical elements:

Calcium

(Ca)

2 atoms

The binding sites of Vanadium atom in the Vanadate-Bound Vanadium-Dependent Bromoperoxidase From Corallina Pilulifera (pdb code 8vh0). This binding sites where shown within 5.0 Angstroms radius around Vanadium atom.
In total 2 binding sites of Vanadium where determined in the Vanadate-Bound Vanadium-Dependent Bromoperoxidase From Corallina Pilulifera, PDB code: 8vh0:
Jump to Vanadium binding site number: 1; 2;

Vanadium binding site 1 out of 2 in the Vanadate-Bound Vanadium-Dependent Bromoperoxidase From Corallina Pilulifera


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 1 of Vanadate-Bound Vanadium-Dependent Bromoperoxidase From Corallina Pilulifera within 5.0Å range: probe atom residue distance (Å) B Occ A:V602 b:20.0 occ:1.00 V A:VO4602 0.0 20.0 1.0 O1 A:VO4602 1.5 20.0 1.0 O3 A:VO4602 1.6 20.0 1.0 O2 A:VO4602 1.6 20.0 1.0 NE2 A:HIS553 2.0 1.2 1.0 CD2 A:HIS553 2.9 2.6 1.0 CE1 A:HIS553 3.0 0.0 1.0 NH2 A:ARG547 3.6 4.2 1.0 CE1 A:HIS480 3.6 13.2 1.0 N A:GLY486 3.7 0.0 1.0 NH2 A:ARG408 3.7 6.0 1.0 NE A:ARG547 3.9 0.0 1.0 NH1 A:ARG408 3.9 0.0 1.0 NZ A:LYS400 4.0 1.4 1.0 CG A:HIS553 4.1 2.5 1.0 OG A:SER485 4.1 13.2 1.0 ND1 A:HIS553 4.1 0.0 1.0 ND1 A:HIS487 4.2 0.8 1.0 O A:HOH702 4.2 30.0 1.0 CZ A:ARG547 4.2 5.0 1.0 N A:HIS487 4.2 12.2 1.0 CA A:SER485 4.3 3.5 1.0 CZ A:ARG408 4.3 0.0 1.0 CG A:PRO478 4.4 13.4 1.0 NE2 A:HIS480 4.4 7.2 1.0 C A:SER485 4.4 1.9 1.0 CA A:GLY486 4.5 0.0 1.0 ND1 A:HIS480 4.5 9.5 1.0 CB A:SER485 4.6 0.9 1.0 CD A:PRO478 4.7 10.2 1.0 CG A:HIS487 4.9 0.8 1.0 CE1 A:HIS487 4.9 10.4 1.0 C A:GLY486 4.9 5.0 1.0 CB A:HIS487 4.9 7.3 1.0 CE A:LYS400 5.0 6.1 1.0 CG2 A:VAL552 5.0 4.1 1.0

Vanadium binding site 2 out of 2 in the Vanadate-Bound Vanadium-Dependent Bromoperoxidase From Corallina Pilulifera


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 2 of Vanadate-Bound Vanadium-Dependent Bromoperoxidase From Corallina Pilulifera within 5.0Å range: probe atom residue distance (Å) B Occ B:V602 b:20.0 occ:1.00 V B:VO4602 0.0 20.0 1.0 O1 B:VO4602 1.5 20.0 1.0 O2 B:VO4602 1.6 20.0 1.0 O3 B:VO4602 1.6 20.0 1.0 NE2 B:HIS553 1.9 3.8 1.0 CD2 B:HIS553 2.8 6.4 1.0 CE1 B:HIS553 2.9 0.0 1.0 NH2 B:ARG547 3.3 5.4 1.0 CE1 B:HIS480 3.5 12.2 1.0 N B:GLY486 3.5 2.6 1.0 NH2 B:ARG408 3.8 5.4 1.0 NE B:ARG547 3.8 0.0 1.0 OG B:SER485 3.9 15.7 1.0 CG B:HIS553 4.0 1.9 1.0 NH1 B:ARG408 4.0 0.0 1.0 NZ B:LYS400 4.0 5.3 1.0 ND1 B:HIS553 4.0 3.8 1.0 CZ B:ARG547 4.0 4.2 1.0 CA B:SER485 4.1 2.4 1.0 N B:HIS487 4.2 10.2 1.0 ND1 B:HIS487 4.2 0.0 1.0 O B:HOH702 4.2 30.0 1.0 C B:SER485 4.3 2.6 1.0 ND1 B:HIS480 4.3 5.4 1.0 CZ B:ARG408 4.3 0.0 1.0 CA B:GLY486 4.4 0.0 1.0 CB B:SER485 4.4 2.3 1.0 NE2 B:HIS480 4.5 9.9 1.0 CG B:PRO478 4.7 9.8 1.0 C B:GLY486 4.8 0.4 1.0 CD B:PRO478 4.9 8.2 1.0 CB B:HIS487 5.0 5.1 1.0 CE B:LYS400 5.0 6.8 1.0 CG B:HIS487 5.0 0.0 1.0

L.Z.Hessefort, D.Williams, K.F.Biegasiewicz. High-Resolution Cryoem Unveils Insights Into the Catalytic Mechanism of A Vanadium-Dependent Bromoperoxidase To Be Published.