Vanadium in PDB 7p06: Cryo-Em Structure of PDR5 From Saccharomyces Cerevisiae in Outward- Facing Conformation with Adp-Orthovanadate/Atp

The structure of Cryo-Em Structure of PDR5 From Saccharomyces Cerevisiae in Outward- Facing Conformation with Adp-Orthovanadate/Atp also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Vanadium atom in the Cryo-Em Structure of PDR5 From Saccharomyces Cerevisiae in Outward- Facing Conformation with Adp-Orthovanadate/Atp (pdb code 7p06). This binding sites where shown within 5.0 Angstroms radius around Vanadium atom.
In total only one binding site of Vanadium was determined in the Cryo-Em Structure of PDR5 From Saccharomyces Cerevisiae in Outward- Facing Conformation with Adp-Orthovanadate/Atp, PDB code: 7p06:

Vanadium binding site 1 out of 1 in the Cryo-Em Structure of PDR5 From Saccharomyces Cerevisiae in Outward- Facing Conformation with Adp-Orthovanadate/Atp


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 1 of Cryo-Em Structure of PDR5 From Saccharomyces Cerevisiae in Outward- Facing Conformation with Adp-Orthovanadate/Atp within 5.0Å range: probe atom residue distance (Å) B Occ A:V1703 b:59.0 occ:1.00 VG A:AOV1703 0.0 59.0 1.0 O1G A:AOV1703 1.6 59.0 1.0 O3G A:AOV1703 1.8 59.0 1.0 O2G A:AOV1703 1.8 59.0 1.0 O4G A:AOV1703 1.8 59.0 1.0 O3B A:AOV1703 1.8 59.0 1.0 H3G1 A:AOV1703 2.3 59.0 1.0 H2G1 A:AOV1703 2.3 59.0 1.0 H4G1 A:AOV1703 2.3 59.0 1.0 PB A:AOV1703 2.9 59.0 1.0 O1B A:AOV1703 3.0 59.0 1.0 HE2 A:HIS1068 3.1 55.5 1.0 HE22 A:GLN951 3.1 60.1 1.0 MG A:MG1702 3.1 55.4 1.0 HZ1 A:LYS911 3.3 54.2 1.0 H A:GLY312 3.3 56.1 1.0 HB2 A:SER310 3.6 59.9 1.0 HA A:SER907 3.6 56.8 1.0 HZ3 A:LYS911 3.8 54.2 1.0 NE2 A:HIS1068 3.9 55.5 1.0 NE2 A:GLN951 3.9 60.1 1.0 HB2 A:SER907 3.9 56.8 1.0 NZ A:LYS911 4.0 54.2 1.0 O3A A:AOV1703 4.0 59.0 1.0 H A:GLY908 4.0 56.8 1.0 O2B A:AOV1703 4.1 59.0 1.0 HA3 A:GLY312 4.1 56.1 1.0 N A:GLY312 4.1 56.1 1.0 HB3 A:SER907 4.2 56.8 1.0 H2B A:AOV1703 4.2 59.0 1.0 O A:GLY338 4.4 57.1 1.0 HE21 A:GLN951 4.4 60.1 1.0 CB A:SER907 4.4 56.8 1.0 CA A:SER907 4.4 56.8 1.0 H A:GLY311 4.4 59.0 1.0 CB A:SER310 4.4 59.9 1.0 HD2 A:HIS1068 4.5 55.5 1.0 OG A:SER310 4.5 59.9 1.0 HZ2 A:LYS911 4.5 54.2 1.0 HE2 A:LYS911 4.6 54.2 1.0 CD2 A:HIS1068 4.6 55.5 1.0 CA A:GLY312 4.7 56.1 1.0 OE2 A:GLU1036 4.7 58.6 1.0 N A:GLY908 4.8 56.8 1.0 OE1 A:GLN951 4.8 60.1 1.0 N A:GLY311 4.8 59.0 1.0 CD A:GLN951 4.8 60.1 1.0 CE A:LYS911 4.8 54.2 1.0 HB3 A:SER310 4.9 59.9 1.0 CE1 A:HIS1068 4.9 55.5 1.0

A.Harris, M.Wagner, D.Du, S.Raschka, L.M.Nentwig, H.Gohlke, S.H.J.Smits, B.F.Luisi, L.Schmitt. Structure and Efflux Mechanism of the Yeast Pleiotropic Drug Resistance Transporter PDR5. Nat Commun V. 12 5254 2021.
ISSN: ESSN 2041-1723
PubMed: 34489436
DOI: 10.1038/S41467-021-25574-8