Atomistry » Vanadium » PDB 1b8j-1yv3 » 1qyl
Atomistry »
  Vanadium »
    PDB 1b8j-1yv3 »
      1qyl »

Vanadium in PDB 1qyl: Gcatgct + Vanadium

Protein crystallography data

The structure of Gcatgct + Vanadium, PDB code: 1qyl was solved by C.J.Cardin, Y.Gan, J.H.Thorpe, S.C.M.Teixeira, B.C.Gale, M.I.A.Moraes, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 5.80 / 1.00
Space group C 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 22.532, 58.469, 24.148, 90.00, 90.00, 90.00
R / Rfree (%) 14.9 / 18.4

Vanadium Binding Sites:

The binding sites of Vanadium atom in the Gcatgct + Vanadium (pdb code 1qyl). This binding sites where shown within 5.0 Angstroms radius around Vanadium atom.
In total only one binding site of Vanadium was determined in the Gcatgct + Vanadium, PDB code: 1qyl:

Vanadium binding site 1 out of 1 in 1qyl

Go back to Vanadium Binding Sites List in 1qyl
Vanadium binding site 1 out of 1 in the Gcatgct + Vanadium


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 1 of Gcatgct + Vanadium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:V8

b:17.5
occ:0.25
O A:HOH108 2.1 7.8 0.5
O A:HOH124 2.1 8.0 0.2
O A:HOH103 2.2 12.3 0.2
O A:HOH102 4.2 8.9 1.0
OP1 A:DT4 4.6 10.5 1.0
OP2 A:DT4 4.7 12.4 1.0

Reference:

C.J.Cardin, Y.Gan, J.H.Thorpe, S.C.M.Teixeira, B.C.Gale, M.I.A.Moraes. Metal Ion Distribution and Stabilisation of the Dna Quadruplex Structure Formed By D(Gcatgct) To Be Published.
Page generated: Fri Oct 11 11:29:55 2024

Last articles

Na in 8VNE
Na in 8VNA
Na in 8VN9
Na in 8VN8
Na in 8VN7
Na in 8VN6
Na in 8VN4
Na in 8VN5
Na in 8VN3
Na in 8VN2
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy