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Vanadium in PDB 9b8z: Cryo-Em Structure of the Human TRPM4 Channel Subunit in Complex with Calcium and Decavanadate at 37 Degrees Celsius

Other elements in 9b8z:

The structure of Cryo-Em Structure of the Human TRPM4 Channel Subunit in Complex with Calcium and Decavanadate at 37 Degrees Celsius also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Vanadium Binding Sites:

The binding sites of Vanadium atom in the Cryo-Em Structure of the Human TRPM4 Channel Subunit in Complex with Calcium and Decavanadate at 37 Degrees Celsius (pdb code 9b8z). This binding sites where shown within 5.0 Angstroms radius around Vanadium atom.
In total 10 binding sites of Vanadium where determined in the Cryo-Em Structure of the Human TRPM4 Channel Subunit in Complex with Calcium and Decavanadate at 37 Degrees Celsius, PDB code: 9b8z:
Jump to Vanadium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Vanadium binding site 1 out of 10 in 9b8z

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Vanadium binding site 1 out of 10 in the Cryo-Em Structure of the Human TRPM4 Channel Subunit in Complex with Calcium and Decavanadate at 37 Degrees Celsius


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 1 of Cryo-Em Structure of the Human TRPM4 Channel Subunit in Complex with Calcium and Decavanadate at 37 Degrees Celsius within 5.0Å range:
probe atom residue distance (Å) B Occ
A:V2003

b:130.6
occ:1.00
 V10 A:DVT2003 0.0 130.6 1.0
O28 A:DVT2003 1.6 130.6 1.0
O15 A:DVT2003 1.8 130.6 1.0
O27 A:DVT2003 1.9 130.6 1.0
O18 A:DVT2003 1.9 130.6 1.0
O23 A:DVT2003 2.1 130.6 1.0
O2 A:DVT2003 2.3 130.6 1.0
V8 A:DVT2003 3.0 130.6 1.0
V3 A:DVT2003 3.0 130.6 1.0
V9 A:DVT2003 3.1 130.6 1.0
V1 A:DVT2003 3.2 130.6 1.0
O17 A:DVT2003 3.5 130.6 1.0
O3 A:DVT2003 3.6 130.6 1.0
O24 A:DVT2003 3.7 130.6 1.0
O4 A:DVT2003 3.7 130.6 1.0
O10 A:DVT2003 4.3 130.6 1.0
V2 A:DVT2003 4.3 130.6 1.0
O26 A:DVT2003 4.4 130.6 1.0
O20 A:DVT2003 4.5 130.6 1.0
O5 A:DVT2003 4.5 130.6 1.0
O9 A:DVT2003 4.5 130.6 1.0
NH1 A:ARG601 4.5 103.0 1.0
O1 A:DVT2003 4.5 130.6 1.0
O8 A:DVT2003 4.6 130.6 1.0
O16 A:DVT2003 4.7 130.6 1.0
NH2 A:ARG664 5.0 85.7 1.0

Vanadium binding site 2 out of 10 in 9b8z

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Vanadium binding site 2 out of 10 in the Cryo-Em Structure of the Human TRPM4 Channel Subunit in Complex with Calcium and Decavanadate at 37 Degrees Celsius


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 2 of Cryo-Em Structure of the Human TRPM4 Channel Subunit in Complex with Calcium and Decavanadate at 37 Degrees Celsius within 5.0Å range:
probe atom residue distance (Å) B Occ
A:V2003

b:130.6
occ:1.00
 V1 A:DVT2003 0.0 130.6 1.0
O5 A:DVT2003 1.6 130.6 1.0
O15 A:DVT2003 1.9 130.6 1.0
O4 A:DVT2003 1.9 130.6 1.0
O3 A:DVT2003 1.9 130.6 1.0
O1 A:DVT2003 2.0 130.6 1.0
O2 A:DVT2003 2.3 130.6 1.0
V2 A:DVT2003 3.0 130.6 1.0
V3 A:DVT2003 3.1 130.6 1.0
V9 A:DVT2003 3.1 130.6 1.0
V10 A:DVT2003 3.2 130.6 1.0
O8 A:DVT2003 3.6 130.6 1.0
O9 A:DVT2003 3.6 130.6 1.0
O27 A:DVT2003 3.6 130.6 1.0
O18 A:DVT2003 3.7 130.6 1.0
NZ A:LYS925 4.2 79.8 1.0
O26 A:DVT2003 4.4 130.6 1.0
V8 A:DVT2003 4.4 130.6 1.0
O10 A:DVT2003 4.4 130.6 1.0
O7 A:DVT2003 4.4 130.6 1.0
O28 A:DVT2003 4.5 130.6 1.0
O17 A:DVT2003 4.6 130.6 1.0
O24 A:DVT2003 4.6 130.6 1.0
O23 A:DVT2003 4.6 130.6 1.0
CE A:LYS925 4.7 79.8 1.0
O16 A:DVT2003 4.7 130.6 1.0
NH1 A:ARG664 4.7 85.7 1.0
NH2 A:ARG664 4.8 85.7 1.0

Vanadium binding site 3 out of 10 in 9b8z

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Vanadium binding site 3 out of 10 in the Cryo-Em Structure of the Human TRPM4 Channel Subunit in Complex with Calcium and Decavanadate at 37 Degrees Celsius


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 3 of Cryo-Em Structure of the Human TRPM4 Channel Subunit in Complex with Calcium and Decavanadate at 37 Degrees Celsius within 5.0Å range:
probe atom residue distance (Å) B Occ
A:V2003

b:130.6
occ:1.00
 V9 A:DVT2003 0.0 130.6 1.0
O26 A:DVT2003 1.6 130.6 1.0
O4 A:DVT2003 1.8 130.6 1.0
O27 A:DVT2003 1.9 130.6 1.0
O8 A:DVT2003 2.0 130.6 1.0
O24 A:DVT2003 2.0 130.6 1.0
O2 A:DVT2003 2.2 130.6 1.0
V2 A:DVT2003 3.1 130.6 1.0
V8 A:DVT2003 3.1 130.6 1.0
V7 A:DVT2003 3.1 130.6 1.0
V1 A:DVT2003 3.1 130.6 1.0
V10 A:DVT2003 3.1 130.6 1.0
O15 A:DVT2003 3.4 130.6 1.0
O1 A:DVT2003 3.5 130.6 1.0
O23 A:DVT2003 3.5 130.6 1.0
O25 A:DVT2003 3.5 130.6 1.0
O16 A:DVT2003 3.6 130.6 1.0
NH1 A:ARG601 4.0 103.0 1.0
O21 A:DVT2003 4.3 130.6 1.0
O5 A:DVT2003 4.4 130.6 1.0
O11 A:DVT2003 4.4 130.6 1.0
O28 A:DVT2003 4.4 130.6 1.0
V3 A:DVT2003 4.4 130.6 1.0
O7 A:DVT2003 4.4 130.6 1.0
O3 A:DVT2003 4.4 130.6 1.0
O20 A:DVT2003 4.4 130.6 1.0
O18 A:DVT2003 4.5 130.6 1.0
O9 A:DVT2003 4.5 130.6 1.0
O17 A:DVT2003 4.5 130.6 1.0

Vanadium binding site 4 out of 10 in 9b8z

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Vanadium binding site 4 out of 10 in the Cryo-Em Structure of the Human TRPM4 Channel Subunit in Complex with Calcium and Decavanadate at 37 Degrees Celsius


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 4 of Cryo-Em Structure of the Human TRPM4 Channel Subunit in Complex with Calcium and Decavanadate at 37 Degrees Celsius within 5.0Å range:
probe atom residue distance (Å) B Occ
A:V2003

b:130.6
occ:1.00
 V7 A:DVT2003 0.0 130.6 1.0
O25 A:DVT2003 1.6 130.6 1.0
O11 A:DVT2003 1.8 130.6 1.0
O21 A:DVT2003 1.8 130.6 1.0
O24 A:DVT2003 2.0 130.6 1.0
O8 A:DVT2003 2.0 130.6 1.0
O16 A:DVT2003 2.2 130.6 1.0
V5 A:DVT2003 3.0 130.6 1.0
V9 A:DVT2003 3.1 130.6 1.0
V6 A:DVT2003 3.1 130.6 1.0
V2 A:DVT2003 3.1 130.6 1.0
V8 A:DVT2003 3.2 130.6 1.0
O6 A:DVT2003 3.3 130.6 1.0
O7 A:DVT2003 3.4 130.6 1.0
O26 A:DVT2003 3.5 130.6 1.0
O20 A:DVT2003 3.5 130.6 1.0
O2 A:DVT2003 3.7 130.6 1.0
O4 A:DVT2003 4.3 130.6 1.0
O14 A:DVT2003 4.3 130.6 1.0
O22 A:DVT2003 4.4 130.6 1.0
O13 A:DVT2003 4.4 130.6 1.0
O27 A:DVT2003 4.4 130.6 1.0
V4 A:DVT2003 4.4 130.6 1.0
O19 A:DVT2003 4.4 130.6 1.0
O1 A:DVT2003 4.5 130.6 1.0
O23 A:DVT2003 4.5 130.6 1.0
O9 A:DVT2003 4.6 130.6 1.0
O17 A:DVT2003 4.6 130.6 1.0

Vanadium binding site 5 out of 10 in 9b8z

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Vanadium binding site 5 out of 10 in the Cryo-Em Structure of the Human TRPM4 Channel Subunit in Complex with Calcium and Decavanadate at 37 Degrees Celsius


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 5 of Cryo-Em Structure of the Human TRPM4 Channel Subunit in Complex with Calcium and Decavanadate at 37 Degrees Celsius within 5.0Å range:
probe atom residue distance (Å) B Occ
A:V2003

b:130.6
occ:1.00
 V6 A:DVT2003 0.0 130.6 1.0
O22 A:DVT2003 1.6 130.6 1.0
O6 A:DVT2003 1.9 130.6 1.0
O21 A:DVT2003 1.9 130.6 1.0
O19 A:DVT2003 1.9 130.6 1.0
O20 A:DVT2003 2.0 130.6 1.0
O16 A:DVT2003 2.3 130.6 1.0
V8 A:DVT2003 3.0 130.6 1.0
V7 A:DVT2003 3.1 130.6 1.0
V4 A:DVT2003 3.1 130.6 1.0
V5 A:DVT2003 3.1 130.6 1.0
O24 A:DVT2003 3.5 130.6 1.0
O17 A:DVT2003 3.6 130.6 1.0
O11 A:DVT2003 3.6 130.6 1.0
O13 A:DVT2003 3.7 130.6 1.0
NZ A:LYS613 3.9 102.5 1.0
V2 A:DVT2003 4.4 130.6 1.0
O25 A:DVT2003 4.4 130.6 1.0
O12 A:DVT2003 4.4 130.6 1.0
O23 A:DVT2003 4.4 130.6 1.0
O14 A:DVT2003 4.5 130.6 1.0
O8 A:DVT2003 4.6 130.6 1.0
O7 A:DVT2003 4.6 130.6 1.0
O9 A:DVT2003 4.6 130.6 1.0
O2 A:DVT2003 4.7 130.6 1.0

Vanadium binding site 6 out of 10 in 9b8z

Go back to Vanadium Binding Sites List in 9b8z
Vanadium binding site 6 out of 10 in the Cryo-Em Structure of the Human TRPM4 Channel Subunit in Complex with Calcium and Decavanadate at 37 Degrees Celsius


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 6 of Cryo-Em Structure of the Human TRPM4 Channel Subunit in Complex with Calcium and Decavanadate at 37 Degrees Celsius within 5.0Å range:
probe atom residue distance (Å) B Occ
A:V2003

b:130.6
occ:1.00
 V8 A:DVT2003 0.0 130.6 1.0
O23 A:DVT2003 1.7 130.6 1.0
O20 A:DVT2003 1.7 130.6 1.0
O17 A:DVT2003 1.9 130.6 1.0
O24 A:DVT2003 1.9 130.6 1.0
O2 A:DVT2003 2.1 130.6 1.0
O16 A:DVT2003 2.1 130.6 1.0
V10 A:DVT2003 3.0 130.6 1.0
O27 A:DVT2003 3.0 130.6 1.0
V6 A:DVT2003 3.0 130.6 1.0
V9 A:DVT2003 3.1 130.6 1.0
O19 A:DVT2003 3.1 130.6 1.0
V4 A:DVT2003 3.1 130.6 1.0
V2 A:DVT2003 3.1 130.6 1.0
O18 A:DVT2003 3.1 130.6 1.0
O21 A:DVT2003 3.1 130.6 1.0
V3 A:DVT2003 3.1 130.6 1.0
V7 A:DVT2003 3.2 130.6 1.0
O9 A:DVT2003 3.4 130.6 1.0
O8 A:DVT2003 3.4 130.6 1.0
NZ A:LYS613 3.8 102.5 1.0
O28 A:DVT2003 4.3 130.6 1.0
O22 A:DVT2003 4.3 130.6 1.0
O15 A:DVT2003 4.3 130.6 1.0
O6 A:DVT2003 4.3 130.6 1.0
V5 A:DVT2003 4.3 130.6 1.0
O13 A:DVT2003 4.3 130.6 1.0
O4 A:DVT2003 4.3 130.6 1.0
O26 A:DVT2003 4.4 130.6 1.0
O3 A:DVT2003 4.4 130.6 1.0
O7 A:DVT2003 4.4 130.6 1.0
V1 A:DVT2003 4.4 130.6 1.0
O12 A:DVT2003 4.4 130.6 1.0
O1 A:DVT2003 4.4 130.6 1.0
O11 A:DVT2003 4.4 130.6 1.0
O10 A:DVT2003 4.4 130.6 1.0
O25 A:DVT2003 4.5 130.6 1.0
NH1 A:ARG601 4.8 103.0 1.0
CE A:LYS613 4.8 102.5 1.0

Vanadium binding site 7 out of 10 in 9b8z

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Vanadium binding site 7 out of 10 in the Cryo-Em Structure of the Human TRPM4 Channel Subunit in Complex with Calcium and Decavanadate at 37 Degrees Celsius


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 7 of Cryo-Em Structure of the Human TRPM4 Channel Subunit in Complex with Calcium and Decavanadate at 37 Degrees Celsius within 5.0Å range:
probe atom residue distance (Å) B Occ
A:V2003

b:130.6
occ:1.00
 V5 A:DVT2003 0.0 130.6 1.0
O14 A:DVT2003 1.6 130.6 1.0
O6 A:DVT2003 1.8 130.6 1.0
O11 A:DVT2003 1.9 130.6 1.0
O13 A:DVT2003 1.9 130.6 1.0
O7 A:DVT2003 2.1 130.6 1.0
O16 A:DVT2003 2.3 130.6 1.0
V7 A:DVT2003 3.0 130.6 1.0
V2 A:DVT2003 3.0 130.6 1.0
V4 A:DVT2003 3.1 130.6 1.0
V6 A:DVT2003 3.1 130.6 1.0
O8 A:DVT2003 3.6 130.6 1.0
O21 A:DVT2003 3.6 130.6 1.0
O19 A:DVT2003 3.6 130.6 1.0
O9 A:DVT2003 3.6 130.6 1.0
O25 A:DVT2003 4.3 130.6 1.0
V8 A:DVT2003 4.3 130.6 1.0
O12 A:DVT2003 4.4 130.6 1.0
O22 A:DVT2003 4.4 130.6 1.0
O24 A:DVT2003 4.5 130.6 1.0
O1 A:DVT2003 4.5 130.6 1.0
O20 A:DVT2003 4.5 130.6 1.0
O17 A:DVT2003 4.5 130.6 1.0
O2 A:DVT2003 4.7 130.6 1.0

Vanadium binding site 8 out of 10 in 9b8z

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Vanadium binding site 8 out of 10 in the Cryo-Em Structure of the Human TRPM4 Channel Subunit in Complex with Calcium and Decavanadate at 37 Degrees Celsius


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 8 of Cryo-Em Structure of the Human TRPM4 Channel Subunit in Complex with Calcium and Decavanadate at 37 Degrees Celsius within 5.0Å range:
probe atom residue distance (Å) B Occ
A:V2003

b:130.6
occ:1.00
 V2 A:DVT2003 0.0 130.6 1.0
O7 A:DVT2003 1.7 130.6 1.0
O1 A:DVT2003 1.7 130.6 1.0
O8 A:DVT2003 1.9 130.6 1.0
O9 A:DVT2003 1.9 130.6 1.0
O16 A:DVT2003 2.1 130.6 1.0
O2 A:DVT2003 2.1 130.6 1.0
V5 A:DVT2003 3.0 130.6 1.0
O4 A:DVT2003 3.0 130.6 1.0
O13 A:DVT2003 3.0 130.6 1.0
V1 A:DVT2003 3.0 130.6 1.0
V9 A:DVT2003 3.1 130.6 1.0
V4 A:DVT2003 3.1 130.6 1.0
O3 A:DVT2003 3.1 130.6 1.0
V8 A:DVT2003 3.1 130.6 1.0
V7 A:DVT2003 3.1 130.6 1.0
V3 A:DVT2003 3.1 130.6 1.0
O11 A:DVT2003 3.2 130.6 1.0
O24 A:DVT2003 3.4 130.6 1.0
O17 A:DVT2003 3.4 130.6 1.0
O14 A:DVT2003 4.3 130.6 1.0
O5 A:DVT2003 4.3 130.6 1.0
O15 A:DVT2003 4.3 130.6 1.0
O27 A:DVT2003 4.3 130.6 1.0
O6 A:DVT2003 4.3 130.6 1.0
V10 A:DVT2003 4.3 130.6 1.0
O21 A:DVT2003 4.4 130.6 1.0
O26 A:DVT2003 4.4 130.6 1.0
O19 A:DVT2003 4.4 130.6 1.0
O25 A:DVT2003 4.4 130.6 1.0
V6 A:DVT2003 4.4 130.6 1.0
O23 A:DVT2003 4.4 130.6 1.0
O18 A:DVT2003 4.4 130.6 1.0
O20 A:DVT2003 4.4 130.6 1.0
O12 A:DVT2003 4.4 130.6 1.0
O10 A:DVT2003 4.4 130.6 1.0
CE A:LYS925 4.9 79.8 1.0

Vanadium binding site 9 out of 10 in 9b8z

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Vanadium binding site 9 out of 10 in the Cryo-Em Structure of the Human TRPM4 Channel Subunit in Complex with Calcium and Decavanadate at 37 Degrees Celsius


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 9 of Cryo-Em Structure of the Human TRPM4 Channel Subunit in Complex with Calcium and Decavanadate at 37 Degrees Celsius within 5.0Å range:
probe atom residue distance (Å) B Occ
A:V2003

b:130.6
occ:1.00
 V4 A:DVT2003 0.0 130.6 1.0
O12 A:DVT2003 1.6 130.6 1.0
O13 A:DVT2003 1.8 130.6 1.0
O19 A:DVT2003 1.8 130.6 1.0
O17 A:DVT2003 2.0 130.6 1.0
O9 A:DVT2003 2.0 130.6 1.0
O16 A:DVT2003 2.2 130.6 1.0
V5 A:DVT2003 3.1 130.6 1.0
V8 A:DVT2003 3.1 130.6 1.0
V2 A:DVT2003 3.1 130.6 1.0
V6 A:DVT2003 3.1 130.6 1.0
V3 A:DVT2003 3.1 130.6 1.0
O6 A:DVT2003 3.3 130.6 1.0
O20 A:DVT2003 3.4 130.6 1.0
O7 A:DVT2003 3.5 130.6 1.0
O10 A:DVT2003 3.5 130.6 1.0
O2 A:DVT2003 3.6 130.6 1.0
O18 A:DVT2003 4.3 130.6 1.0
O14 A:DVT2003 4.3 130.6 1.0
O3 A:DVT2003 4.4 130.6 1.0
O22 A:DVT2003 4.4 130.6 1.0
V7 A:DVT2003 4.4 130.6 1.0
O21 A:DVT2003 4.4 130.6 1.0
O23 A:DVT2003 4.4 130.6 1.0
O11 A:DVT2003 4.5 130.6 1.0
O1 A:DVT2003 4.5 130.6 1.0
O24 A:DVT2003 4.5 130.6 1.0
O8 A:DVT2003 4.6 130.6 1.0

Vanadium binding site 10 out of 10 in 9b8z

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Vanadium binding site 10 out of 10 in the Cryo-Em Structure of the Human TRPM4 Channel Subunit in Complex with Calcium and Decavanadate at 37 Degrees Celsius


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 10 of Cryo-Em Structure of the Human TRPM4 Channel Subunit in Complex with Calcium and Decavanadate at 37 Degrees Celsius within 5.0Å range:
probe atom residue distance (Å) B Occ
A:V2003

b:130.6
occ:1.00
 V3 A:DVT2003 0.0 130.6 1.0
O10 A:DVT2003 1.6 130.6 1.0
O3 A:DVT2003 1.8 130.6 1.0
O18 A:DVT2003 1.8 130.6 1.0
O9 A:DVT2003 2.0 130.6 1.0
O17 A:DVT2003 2.0 130.6 1.0
O2 A:DVT2003 2.2 130.6 1.0
V10 A:DVT2003 3.0 130.6 1.0
V1 A:DVT2003 3.1 130.6 1.0
V4 A:DVT2003 3.1 130.6 1.0
V2 A:DVT2003 3.1 130.6 1.0
V8 A:DVT2003 3.1 130.6 1.0
O15 A:DVT2003 3.3 130.6 1.0
O1 A:DVT2003 3.4 130.6 1.0
O23 A:DVT2003 3.5 130.6 1.0
O12 A:DVT2003 3.5 130.6 1.0
O16 A:DVT2003 3.7 130.6 1.0
O13 A:DVT2003 4.3 130.6 1.0
O28 A:DVT2003 4.3 130.6 1.0
O27 A:DVT2003 4.4 130.6 1.0
O4 A:DVT2003 4.4 130.6 1.0
O19 A:DVT2003 4.4 130.6 1.0
O5 A:DVT2003 4.4 130.6 1.0
V9 A:DVT2003 4.4 130.6 1.0
O7 A:DVT2003 4.5 130.6 1.0
O20 A:DVT2003 4.5 130.6 1.0
O8 A:DVT2003 4.6 130.6 1.0
O24 A:DVT2003 4.6 130.6 1.0
NH2 A:ARG664 4.6 85.7 1.0

Reference:

J.Hu, S.J.Park, T.Walter, I.J.Orozco, G.O'dea, X.Ye, J.Du, W.Lu. Physiological Temperature Drives TRPM4 Ligand Recognition and Gating Nature 2024.
ISSN: ESSN 1476-4687
DOI: 10.1038/S41586-024-07436-7
Page generated: Fri Oct 11 20:47:08 2024

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