Vanadium in PDB 8vow: Cryo-Em Structure of the Abc Transporter PCAT1 Cysteine-Free Core Bound with Mgatp and VI

The structure of Cryo-Em Structure of the Abc Transporter PCAT1 Cysteine-Free Core Bound with Mgatp and VI also contains other interesting chemical elements:

Magnesium

(Mg)

2 atoms

The binding sites of Vanadium atom in the Cryo-Em Structure of the Abc Transporter PCAT1 Cysteine-Free Core Bound with Mgatp and VI (pdb code 8vow). This binding sites where shown within 5.0 Angstroms radius around Vanadium atom.
In total only one binding site of Vanadium was determined in the Cryo-Em Structure of the Abc Transporter PCAT1 Cysteine-Free Core Bound with Mgatp and VI, PDB code: 8vow:

Vanadium binding site 1 out of 1 in the Cryo-Em Structure of the Abc Transporter PCAT1 Cysteine-Free Core Bound with Mgatp and VI


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 1 of Cryo-Em Structure of the Abc Transporter PCAT1 Cysteine-Free Core Bound with Mgatp and VI within 5.0Å range: probe atom residue distance (Å) B Occ B:V802 b:63.5 occ:1.00 V B:VO4802 0.0 63.5 1.0 O3 B:VO4802 1.9 63.5 1.0 O2 B:VO4802 1.9 63.5 1.0 O4 B:VO4802 1.9 63.5 1.0 O1 B:VO4802 1.9 63.5 1.0 MG B:MG803 2.2 59.8 1.0 O2B B:ADP801 2.8 55.5 1.0 NE2 B:HIS679 3.7 66.8 1.0 CE1 B:HIS679 3.9 66.8 1.0 N A:GLY626 3.9 55.2 1.0 NE2 B:GLN567 4.0 56.1 1.0 PB B:ADP801 4.1 55.5 1.0 CB B:SER521 4.1 63.9 1.0 O1B B:ADP801 4.3 55.5 1.0 CA B:SER521 4.3 63.9 1.0 CA A:GLY626 4.3 55.2 1.0 OG A:SER624 4.4 54.8 1.0 O A:ASN652 4.4 60.2 1.0 O3A B:ADP801 4.6 55.5 1.0 NZ B:LYS525 4.8 56.2 1.0 CE B:LYS525 4.8 56.2 1.0 OE1 B:GLN567 4.8 56.1 1.0 CB A:SER624 4.9 54.8 1.0 C B:SER521 4.9 63.9 1.0 CD B:GLN567 4.9 56.1 1.0 CD2 B:HIS679 4.9 66.8 1.0 N A:GLU625 4.9 56.0 1.0 O B:SER521 5.0 63.9 1.0

R.Zhang, K.L.Jagessar, M.Brownd, A.Polasa, R.A.Stein, M.Moradi, E.Karakas, H.S.Mchaourab. Conformational Cycle of A Protease-Containing Abc Transporter in Lipid Nanodiscs Reveals the Mechanism of Cargo-Protein Coupling. Nat Commun V. 15 9055 2024.
ISSN: ESSN 2041-1723
PubMed: 39428489
DOI: 10.1038/S41467-024-53420-0