Vanadium in PDB 8pmj: Vanadate-Trapped Bsep in Nanodiscs

The structure of Vanadate-Trapped Bsep in Nanodiscs also contains other interesting chemical elements:

Magnesium

(Mg)

2 atoms

The binding sites of Vanadium atom in the Vanadate-Trapped Bsep in Nanodiscs (pdb code 8pmj). This binding sites where shown within 5.0 Angstroms radius around Vanadium atom.
In total only one binding site of Vanadium was determined in the Vanadate-Trapped Bsep in Nanodiscs, PDB code: 8pmj:

Vanadium binding site 1 out of 1 in the Vanadate-Trapped Bsep in Nanodiscs


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 1 of Vanadate-Trapped Bsep in Nanodiscs within 5.0Å range: probe atom residue distance (Å) B Occ A:V1507 b:20.0 occ:1.00 V A:VO41507 0.0 20.0 1.0 O1 A:VO41507 1.9 20.0 1.0 O4 A:VO41507 1.9 20.0 1.0 O2 A:VO41507 1.9 20.0 1.0 O3 A:VO41507 1.9 20.0 1.0 O3B A:ADP1506 2.5 20.0 1.0 NE2 A:GLN1161 3.7 39.1 0.1 PB A:ADP1506 3.7 20.0 1.0 O A:HOH1602 3.7 34.4 1.0 NE2 A:HIS1275 3.8 37.1 1.0 MG A:MG1508 3.8 36.3 1.0 O1B A:ADP1506 3.9 20.0 1.0 N A:GLY562 3.9 10.2 1.0 O A:ALA588 4.0 33.9 0.7 N A:GLY561 4.1 25.8 1.0 OE2 A:GLU1244 4.1 34.4 1.0 OG A:SER1115 4.2 42.2 0.9 N A:GLY1116 4.3 41.4 1.0 CB A:SER560 4.4 31.8 1.0 OG A:SER560 4.4 33.0 1.0 OE1 A:GLN1161 4.4 46.5 1.0 CA A:SER1115 4.4 30.4 1.0 CD A:GLN1161 4.5 38.1 1.0 CB A:SER1115 4.5 33.2 1.0 CA A:GLY561 4.6 18.9 1.0 NZ A:LYS1119 4.6 29.5 1.0 O3A A:ADP1506 4.6 20.0 1.0 CE1 A:HIS1275 4.6 31.3 1.0 O2B A:ADP1506 4.7 20.0 1.0 CA A:GLY562 4.7 14.7 1.0 C A:GLY561 4.7 12.2 1.0 CD2 A:HIS1275 4.8 30.1 1.0 C A:SER1115 4.8 36.6 1.0 CD A:GLU1244 4.9 34.7 0.7 C A:SER560 4.9 29.3 0.8

H.Liu, R.N.Irobalieva, J.Kowal, D.Ni, K.Nosol, R.Bang-Sorensen, L.Lancien, H.Stahlberg, B.Stieger, K.P.Locher. Structural Basis of Bile Salt Extrusion and Small-Molecule Inhibition in Human Bsep. Nat Commun V. 14 7296 2023.
ISSN: ESSN 2041-1723
PubMed: 37949847
DOI: 10.1038/S41467-023-43109-1