Vanadium in PDB 8fd6: Engineered Human Dynein Motor Domain in the Microtubule-Unbound State in the Buffer Containing Atp-VI

The structure of Engineered Human Dynein Motor Domain in the Microtubule-Unbound State in the Buffer Containing Atp-VI also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Vanadium atom in the Engineered Human Dynein Motor Domain in the Microtubule-Unbound State in the Buffer Containing Atp-VI (pdb code 8fd6). This binding sites where shown within 5.0 Angstroms radius around Vanadium atom.
In total only one binding site of Vanadium was determined in the Engineered Human Dynein Motor Domain in the Microtubule-Unbound State in the Buffer Containing Atp-VI, PDB code: 8fd6:

Vanadium binding site 1 out of 1 in the Engineered Human Dynein Motor Domain in the Microtubule-Unbound State in the Buffer Containing Atp-VI


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 1 of Engineered Human Dynein Motor Domain in the Microtubule-Unbound State in the Buffer Containing Atp-VI within 5.0Å range: probe atom residue distance (Å) B Occ A:V3205 b:57.9 occ:1.00 V A:VO43205 0.0 57.9 1.0 O2 A:VO43205 1.9 57.9 1.0 O3 A:VO43205 1.9 57.9 1.0 O1 A:VO43205 1.9 57.9 1.0 O4 A:VO43205 1.9 57.9 1.0 O1B A:ADP3204 2.7 57.9 1.0 NH1 A:ARG903 3.3 57.0 1.0 MG A:MG3206 3.7 56.9 1.0 NH2 A:ARG636 3.7 57.1 1.0 PB A:ADP3204 3.7 57.9 1.0 ND2 A:ASN564 3.8 57.6 1.0 O2B A:ADP3204 3.8 57.9 1.0 OE2 A:GLU504 3.9 58.0 1.0 NH2 A:ARG903 4.0 57.0 1.0 CZ A:ARG903 4.1 57.0 1.0 N A:GLY454 4.3 55.1 1.0 O3B A:ADP3204 4.4 57.9 1.0 CA A:ALA453 4.6 56.4 1.0 CB A:ALA453 4.6 56.4 1.0 O1A A:ADP3204 4.7 57.9 1.0 CB A:ALA899 4.7 60.1 1.0 CZ A:ARG636 4.7 57.1 1.0 NH1 A:ARG636 4.7 57.1 1.0 CD A:GLU504 4.8 58.0 1.0 CG A:ASN564 4.9 57.6 1.0 OD1 A:ASN564 5.0 57.6 1.0

W.D.Ton, Y.Wang, P.Chai, C.Beauchamp-Perez, N.T.Flint, L.G.Lammers, H.Xiong, K.Zhang, S.M.Markus. Microtubule-Binding-Induced Allostery Triggers LIS1 Dissociation From Dynein Prior to Cargo Transport Nat.Struct.Mol.Biol. 2023.
ISSN: ESSN 1545-9985
DOI: 10.1038/S41594-023-01010-X