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Vanadium in PDB 8dmm: Structure of the Vanadate-Trapped Msba Bound to Kdl

Vanadium Binding Sites:

The binding sites of Vanadium atom in the Structure of the Vanadate-Trapped Msba Bound to Kdl (pdb code 8dmm). This binding sites where shown within 5.0 Angstroms radius around Vanadium atom.
In total 2 binding sites of Vanadium where determined in the Structure of the Vanadate-Trapped Msba Bound to Kdl, PDB code: 8dmm:
Jump to Vanadium binding site number: 1; 2;

Vanadium binding site 1 out of 2 in 8dmm

Go back to Vanadium Binding Sites List in 8dmm
Vanadium binding site 1 out of 2 in the Structure of the Vanadate-Trapped Msba Bound to Kdl


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 1 of Structure of the Vanadate-Trapped Msba Bound to Kdl within 5.0Å range:
probe atom residue distance (Å) B Occ
A:V801

b:64.3
occ:1.00
VG A:AOV801 0.0 64.3 1.0
O1G A:AOV801 2.1 64.3 1.0
O4G A:AOV801 2.1 64.3 1.0
O3G A:AOV801 2.1 64.3 1.0
O2G A:AOV801 2.1 64.3 1.0
O3B A:AOV801 2.1 64.3 1.0
PB A:AOV801 3.1 64.3 1.0
O2B A:AOV801 3.3 64.3 1.0
O1B A:AOV801 3.5 64.3 1.0
N B:GLY484 3.6 51.8 1.0
N A:GLY379 3.6 68.0 1.0
NE2 A:GLN424 3.8 57.6 1.0
CA B:GLY483 3.8 47.4 1.0
NE2 A:HIS537 3.9 70.1 1.0
CA A:GLY379 4.1 68.0 1.0
C B:GLY483 4.2 47.4 1.0
OE2 A:GLU506 4.3 63.7 1.0
O B:SER482 4.4 46.6 1.0
C A:SER378 4.5 68.6 1.0
OE1 A:GLN424 4.5 57.6 1.0
O3A A:AOV801 4.6 64.3 1.0
CE1 A:HIS537 4.6 70.1 1.0
CA A:SER378 4.6 68.6 1.0
CD A:GLN424 4.6 57.6 1.0
CA B:GLY484 4.6 51.8 1.0
N B:GLY483 4.7 47.4 1.0
O B:ALA510 4.7 57.0 1.0
CD A:LYS382 4.8 61.8 1.0
CB A:SER378 4.8 68.6 1.0
C B:SER482 4.8 46.6 1.0
OG B:SER482 4.9 46.6 1.0
O1A A:AOV801 4.9 64.3 1.0
CD2 A:HIS537 5.0 70.1 1.0

Vanadium binding site 2 out of 2 in 8dmm

Go back to Vanadium Binding Sites List in 8dmm
Vanadium binding site 2 out of 2 in the Structure of the Vanadate-Trapped Msba Bound to Kdl


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 2 of Structure of the Vanadate-Trapped Msba Bound to Kdl within 5.0Å range:
probe atom residue distance (Å) B Occ
B:V801

b:64.3
occ:1.00
VG B:AOV801 0.0 64.3 1.0
O1G B:AOV801 2.1 64.3 1.0
O4G B:AOV801 2.1 64.3 1.0
O3G B:AOV801 2.1 64.3 1.0
O2G B:AOV801 2.1 64.3 1.0
O3B B:AOV801 2.1 64.3 1.0
PB B:AOV801 3.1 64.3 1.0
O2B B:AOV801 3.3 64.3 1.0
O1B B:AOV801 3.5 64.3 1.0
N B:GLY379 3.6 68.0 1.0
N A:GLY484 3.7 51.8 1.0
NE2 B:GLN424 3.8 57.6 1.0
NE2 B:HIS537 3.9 70.1 1.0
CA A:GLY483 4.0 47.4 1.0
CA B:GLY379 4.1 68.0 1.0
OE2 B:GLU506 4.3 63.7 1.0
C A:GLY483 4.4 47.4 1.0
C B:SER378 4.5 68.6 1.0
OE1 B:GLN424 4.5 57.6 1.0
O A:SER482 4.6 46.6 1.0
O3A B:AOV801 4.6 64.3 1.0
CE1 B:HIS537 4.6 70.1 1.0
CA B:SER378 4.6 68.6 1.0
CD B:GLN424 4.6 57.6 1.0
O A:ALA510 4.7 57.0 1.0
CA A:GLY484 4.7 51.8 1.0
CD B:LYS382 4.8 61.8 1.0
CB B:SER378 4.8 68.6 1.0
N A:GLY483 4.9 47.4 1.0
O1A B:AOV801 4.9 64.3 1.0
CD2 B:HIS537 5.0 70.1 1.0

Reference:

J.Lyu, C.Liu, T.Zhang, S.Schrecke, N.P.Elam, C.Packianathan, G.K.A.Hochberg, D.Russell, M.Zhao, A.Laganowsky. Structural Basis For Lipid and Copper Regulation of the Abc Transporter Msba. Nat Commun V. 13 7291 2022.
ISSN: ESSN 2041-1723
PubMed: 36435815
DOI: 10.1038/S41467-022-34905-2
Page generated: Fri Oct 11 20:43:45 2024

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