Atomistry » Vanadium » PDB 7q0v-9g2m » 8dmm
Atomistry »
  Vanadium »
    PDB 7q0v-9g2m »
      8dmm »

Vanadium in PDB 8dmm: Structure of the Vanadate-Trapped Msba Bound to Kdl

Vanadium Binding Sites:

The binding sites of Vanadium atom in the Structure of the Vanadate-Trapped Msba Bound to Kdl (pdb code 8dmm). This binding sites where shown within 5.0 Angstroms radius around Vanadium atom.
In total 2 binding sites of Vanadium where determined in the Structure of the Vanadate-Trapped Msba Bound to Kdl, PDB code: 8dmm:
Jump to Vanadium binding site number: 1; 2;

Vanadium binding site 1 out of 2 in 8dmm

Go back to Vanadium Binding Sites List in 8dmm
Vanadium binding site 1 out of 2 in the Structure of the Vanadate-Trapped Msba Bound to Kdl


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 1 of Structure of the Vanadate-Trapped Msba Bound to Kdl within 5.0Å range:
probe atom residue distance (Å) B Occ
A:V801

b:64.3
occ:1.00
VG A:AOV801 0.0 64.3 1.0
O1G A:AOV801 2.1 64.3 1.0
O4G A:AOV801 2.1 64.3 1.0
O3G A:AOV801 2.1 64.3 1.0
O2G A:AOV801 2.1 64.3 1.0
O3B A:AOV801 2.1 64.3 1.0
PB A:AOV801 3.1 64.3 1.0
O2B A:AOV801 3.3 64.3 1.0
O1B A:AOV801 3.5 64.3 1.0
N B:GLY484 3.6 51.8 1.0
N A:GLY379 3.6 68.0 1.0
NE2 A:GLN424 3.8 57.6 1.0
CA B:GLY483 3.8 47.4 1.0
NE2 A:HIS537 3.9 70.1 1.0
CA A:GLY379 4.1 68.0 1.0
C B:GLY483 4.2 47.4 1.0
OE2 A:GLU506 4.3 63.7 1.0
O B:SER482 4.4 46.6 1.0
C A:SER378 4.5 68.6 1.0
OE1 A:GLN424 4.5 57.6 1.0
O3A A:AOV801 4.6 64.3 1.0
CE1 A:HIS537 4.6 70.1 1.0
CA A:SER378 4.6 68.6 1.0
CD A:GLN424 4.6 57.6 1.0
CA B:GLY484 4.6 51.8 1.0
N B:GLY483 4.7 47.4 1.0
O B:ALA510 4.7 57.0 1.0
CD A:LYS382 4.8 61.8 1.0
CB A:SER378 4.8 68.6 1.0
C B:SER482 4.8 46.6 1.0
OG B:SER482 4.9 46.6 1.0
O1A A:AOV801 4.9 64.3 1.0
CD2 A:HIS537 5.0 70.1 1.0

Vanadium binding site 2 out of 2 in 8dmm

Go back to Vanadium Binding Sites List in 8dmm
Vanadium binding site 2 out of 2 in the Structure of the Vanadate-Trapped Msba Bound to Kdl


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 2 of Structure of the Vanadate-Trapped Msba Bound to Kdl within 5.0Å range:
probe atom residue distance (Å) B Occ
B:V801

b:64.3
occ:1.00
VG B:AOV801 0.0 64.3 1.0
O1G B:AOV801 2.1 64.3 1.0
O4G B:AOV801 2.1 64.3 1.0
O3G B:AOV801 2.1 64.3 1.0
O2G B:AOV801 2.1 64.3 1.0
O3B B:AOV801 2.1 64.3 1.0
PB B:AOV801 3.1 64.3 1.0
O2B B:AOV801 3.3 64.3 1.0
O1B B:AOV801 3.5 64.3 1.0
N B:GLY379 3.6 68.0 1.0
N A:GLY484 3.7 51.8 1.0
NE2 B:GLN424 3.8 57.6 1.0
NE2 B:HIS537 3.9 70.1 1.0
CA A:GLY483 4.0 47.4 1.0
CA B:GLY379 4.1 68.0 1.0
OE2 B:GLU506 4.3 63.7 1.0
C A:GLY483 4.4 47.4 1.0
C B:SER378 4.5 68.6 1.0
OE1 B:GLN424 4.5 57.6 1.0
O A:SER482 4.6 46.6 1.0
O3A B:AOV801 4.6 64.3 1.0
CE1 B:HIS537 4.6 70.1 1.0
CA B:SER378 4.6 68.6 1.0
CD B:GLN424 4.6 57.6 1.0
O A:ALA510 4.7 57.0 1.0
CA A:GLY484 4.7 51.8 1.0
CD B:LYS382 4.8 61.8 1.0
CB B:SER378 4.8 68.6 1.0
N A:GLY483 4.9 47.4 1.0
O1A B:AOV801 4.9 64.3 1.0
CD2 B:HIS537 5.0 70.1 1.0

Reference:

J.Lyu, C.Liu, T.Zhang, S.Schrecke, N.P.Elam, C.Packianathan, G.K.A.Hochberg, D.Russell, M.Zhao, A.Laganowsky. Structural Basis For Lipid and Copper Regulation of the Abc Transporter Msba. Nat Commun V. 13 7291 2022.
ISSN: ESSN 2041-1723
PubMed: 36435815
DOI: 10.1038/S41467-022-34905-2
Page generated: Fri Oct 11 20:43:45 2024

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy