Vanadium in PDB 8dmm: Structure of the Vanadate-Trapped Msba Bound to Kdl

The binding sites of Vanadium atom in the Structure of the Vanadate-Trapped Msba Bound to Kdl (pdb code 8dmm). This binding sites where shown within 5.0 Angstroms radius around Vanadium atom.
In total 2 binding sites of Vanadium where determined in the Structure of the Vanadate-Trapped Msba Bound to Kdl, PDB code: 8dmm:
Jump to Vanadium binding site number: 1; 2;

Vanadium binding site 1 out of 2 in the Structure of the Vanadate-Trapped Msba Bound to Kdl


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 1 of Structure of the Vanadate-Trapped Msba Bound to Kdl within 5.0Å range: probe atom residue distance (Å) B Occ A:V801 b:64.3 occ:1.00 VG A:AOV801 0.0 64.3 1.0 O1G A:AOV801 2.1 64.3 1.0 O4G A:AOV801 2.1 64.3 1.0 O3G A:AOV801 2.1 64.3 1.0 O2G A:AOV801 2.1 64.3 1.0 O3B A:AOV801 2.1 64.3 1.0 PB A:AOV801 3.1 64.3 1.0 O2B A:AOV801 3.3 64.3 1.0 O1B A:AOV801 3.5 64.3 1.0 N B:GLY484 3.6 51.8 1.0 N A:GLY379 3.6 68.0 1.0 NE2 A:GLN424 3.8 57.6 1.0 CA B:GLY483 3.8 47.4 1.0 NE2 A:HIS537 3.9 70.1 1.0 CA A:GLY379 4.1 68.0 1.0 C B:GLY483 4.2 47.4 1.0 OE2 A:GLU506 4.3 63.7 1.0 O B:SER482 4.4 46.6 1.0 C A:SER378 4.5 68.6 1.0 OE1 A:GLN424 4.5 57.6 1.0 O3A A:AOV801 4.6 64.3 1.0 CE1 A:HIS537 4.6 70.1 1.0 CA A:SER378 4.6 68.6 1.0 CD A:GLN424 4.6 57.6 1.0 CA B:GLY484 4.6 51.8 1.0 N B:GLY483 4.7 47.4 1.0 O B:ALA510 4.7 57.0 1.0 CD A:LYS382 4.8 61.8 1.0 CB A:SER378 4.8 68.6 1.0 C B:SER482 4.8 46.6 1.0 OG B:SER482 4.9 46.6 1.0 O1A A:AOV801 4.9 64.3 1.0 CD2 A:HIS537 5.0 70.1 1.0

Vanadium binding site 2 out of 2 in the Structure of the Vanadate-Trapped Msba Bound to Kdl


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 2 of Structure of the Vanadate-Trapped Msba Bound to Kdl within 5.0Å range: probe atom residue distance (Å) B Occ B:V801 b:64.3 occ:1.00 VG B:AOV801 0.0 64.3 1.0 O1G B:AOV801 2.1 64.3 1.0 O4G B:AOV801 2.1 64.3 1.0 O3G B:AOV801 2.1 64.3 1.0 O2G B:AOV801 2.1 64.3 1.0 O3B B:AOV801 2.1 64.3 1.0 PB B:AOV801 3.1 64.3 1.0 O2B B:AOV801 3.3 64.3 1.0 O1B B:AOV801 3.5 64.3 1.0 N B:GLY379 3.6 68.0 1.0 N A:GLY484 3.7 51.8 1.0 NE2 B:GLN424 3.8 57.6 1.0 NE2 B:HIS537 3.9 70.1 1.0 CA A:GLY483 4.0 47.4 1.0 CA B:GLY379 4.1 68.0 1.0 OE2 B:GLU506 4.3 63.7 1.0 C A:GLY483 4.4 47.4 1.0 C B:SER378 4.5 68.6 1.0 OE1 B:GLN424 4.5 57.6 1.0 O A:SER482 4.6 46.6 1.0 O3A B:AOV801 4.6 64.3 1.0 CE1 B:HIS537 4.6 70.1 1.0 CA B:SER378 4.6 68.6 1.0 CD B:GLN424 4.6 57.6 1.0 O A:ALA510 4.7 57.0 1.0 CA A:GLY484 4.7 51.8 1.0 CD B:LYS382 4.8 61.8 1.0 CB B:SER378 4.8 68.6 1.0 N A:GLY483 4.9 47.4 1.0 O1A B:AOV801 4.9 64.3 1.0 CD2 B:HIS537 5.0 70.1 1.0

J.Lyu, C.Liu, T.Zhang, S.Schrecke, N.P.Elam, C.Packianathan, G.K.A.Hochberg, D.Russell, M.Zhao, A.Laganowsky. Structural Basis For Lipid and Copper Regulation of the Abc Transporter Msba. Nat Commun V. 13 7291 2022.
ISSN: ESSN 2041-1723
PubMed: 36435815
DOI: 10.1038/S41467-022-34905-2