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Vanadium in PDB 7zrd: Cryo-Em Map of the Wt Kdpfabc Complex in the E1-P Tight Conformation, Stabilised with the Inhibitor Orthovanadate

Enzymatic activity of Cryo-Em Map of the Wt Kdpfabc Complex in the E1-P Tight Conformation, Stabilised with the Inhibitor Orthovanadate

All present enzymatic activity of Cryo-Em Map of the Wt Kdpfabc Complex in the E1-P Tight Conformation, Stabilised with the Inhibitor Orthovanadate:
7.2.2.6;

Other elements in 7zrd:

The structure of Cryo-Em Map of the Wt Kdpfabc Complex in the E1-P Tight Conformation, Stabilised with the Inhibitor Orthovanadate also contains other interesting chemical elements:

Potassium (K) 9 atoms

Vanadium Binding Sites:

The binding sites of Vanadium atom in the Cryo-Em Map of the Wt Kdpfabc Complex in the E1-P Tight Conformation, Stabilised with the Inhibitor Orthovanadate (pdb code 7zrd). This binding sites where shown within 5.0 Angstroms radius around Vanadium atom.
In total only one binding site of Vanadium was determined in the Cryo-Em Map of the Wt Kdpfabc Complex in the E1-P Tight Conformation, Stabilised with the Inhibitor Orthovanadate, PDB code: 7zrd:

Vanadium binding site 1 out of 1 in 7zrd

Go back to Vanadium Binding Sites List in 7zrd
Vanadium binding site 1 out of 1 in the Cryo-Em Map of the Wt Kdpfabc Complex in the E1-P Tight Conformation, Stabilised with the Inhibitor Orthovanadate


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 1 of Cryo-Em Map of the Wt Kdpfabc Complex in the E1-P Tight Conformation, Stabilised with the Inhibitor Orthovanadate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:V703

b:68.0
occ:1.00
V B:VO4703 0.0 68.0 1.0
O3 B:VO4703 1.9 68.0 1.0
O1 B:VO4703 1.9 68.0 1.0
O4 B:VO4703 1.9 68.0 1.0
O2 B:VO4703 1.9 68.0 1.0
OD2 B:ASP307 2.9 57.8 1.0
NZ B:LYS499 3.0 65.1 1.0
OG1 B:THR309 3.4 62.5 1.0
CG2 B:THR309 3.7 62.5 1.0
CG2 B:ILE470 3.7 57.3 1.0
CG B:ASP307 3.8 57.8 1.0
CE B:LYS499 3.9 65.1 1.0
CB B:THR309 4.1 62.5 1.0
OD2 B:ASP522 4.3 60.7 1.0
OD1 B:ASP307 4.4 57.8 1.0
CB B:ILE470 4.4 57.3 1.0
CD B:LYS499 4.5 65.1 1.0
O B:ILE470 4.5 57.3 1.0
CB B:ASP307 4.6 57.8 1.0
N B:THR309 4.6 62.5 1.0
CA B:ASP307 4.6 57.8 1.0
OD1 B:ASP522 4.8 60.7 1.0
C B:ILE470 4.9 57.3 1.0
CG B:ASP522 4.9 60.7 1.0
N B:LYS308 4.9 59.0 1.0

Reference:

J.M.Silberberg, C.Stock, L.Hielkema, R.A.Corey, J.Rheinberger, D.Wunnicke, V.R.A.Dubach, P.J.Stansfeld, I.Hanelt, C.Paulino. Inhibited Kdpfabc Transitions Into An E1 Off-Cycle State. Elife V. 11 2022.
ISSN: ESSN 2050-084X
PubMed: 36255052
DOI: 10.7554/ELIFE.80988
Page generated: Fri Oct 11 20:41:54 2024

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