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Vanadium in PDB 7p06: Cryo-Em Structure of PDR5 From Saccharomyces Cerevisiae in Outward- Facing Conformation with Adp-Orthovanadate/Atp

Other elements in 7p06:

The structure of Cryo-Em Structure of PDR5 From Saccharomyces Cerevisiae in Outward- Facing Conformation with Adp-Orthovanadate/Atp also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Vanadium Binding Sites:

The binding sites of Vanadium atom in the Cryo-Em Structure of PDR5 From Saccharomyces Cerevisiae in Outward- Facing Conformation with Adp-Orthovanadate/Atp (pdb code 7p06). This binding sites where shown within 5.0 Angstroms radius around Vanadium atom.
In total only one binding site of Vanadium was determined in the Cryo-Em Structure of PDR5 From Saccharomyces Cerevisiae in Outward- Facing Conformation with Adp-Orthovanadate/Atp, PDB code: 7p06:

Vanadium binding site 1 out of 1 in 7p06

Go back to Vanadium Binding Sites List in 7p06
Vanadium binding site 1 out of 1 in the Cryo-Em Structure of PDR5 From Saccharomyces Cerevisiae in Outward- Facing Conformation with Adp-Orthovanadate/Atp


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 1 of Cryo-Em Structure of PDR5 From Saccharomyces Cerevisiae in Outward- Facing Conformation with Adp-Orthovanadate/Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:V1703

b:59.0
occ:1.00
VG A:AOV1703 0.0 59.0 1.0
O1G A:AOV1703 1.6 59.0 1.0
O3G A:AOV1703 1.8 59.0 1.0
O2G A:AOV1703 1.8 59.0 1.0
O4G A:AOV1703 1.8 59.0 1.0
O3B A:AOV1703 1.8 59.0 1.0
H3G1 A:AOV1703 2.3 59.0 1.0
H2G1 A:AOV1703 2.3 59.0 1.0
H4G1 A:AOV1703 2.3 59.0 1.0
PB A:AOV1703 2.9 59.0 1.0
O1B A:AOV1703 3.0 59.0 1.0
HE2 A:HIS1068 3.1 55.5 1.0
HE22 A:GLN951 3.1 60.1 1.0
MG A:MG1702 3.1 55.4 1.0
HZ1 A:LYS911 3.3 54.2 1.0
H A:GLY312 3.3 56.1 1.0
HB2 A:SER310 3.6 59.9 1.0
HA A:SER907 3.6 56.8 1.0
HZ3 A:LYS911 3.8 54.2 1.0
NE2 A:HIS1068 3.9 55.5 1.0
NE2 A:GLN951 3.9 60.1 1.0
HB2 A:SER907 3.9 56.8 1.0
NZ A:LYS911 4.0 54.2 1.0
O3A A:AOV1703 4.0 59.0 1.0
H A:GLY908 4.0 56.8 1.0
O2B A:AOV1703 4.1 59.0 1.0
HA3 A:GLY312 4.1 56.1 1.0
N A:GLY312 4.1 56.1 1.0
HB3 A:SER907 4.2 56.8 1.0
H2B A:AOV1703 4.2 59.0 1.0
O A:GLY338 4.4 57.1 1.0
HE21 A:GLN951 4.4 60.1 1.0
CB A:SER907 4.4 56.8 1.0
CA A:SER907 4.4 56.8 1.0
H A:GLY311 4.4 59.0 1.0
CB A:SER310 4.4 59.9 1.0
HD2 A:HIS1068 4.5 55.5 1.0
OG A:SER310 4.5 59.9 1.0
HZ2 A:LYS911 4.5 54.2 1.0
HE2 A:LYS911 4.6 54.2 1.0
CD2 A:HIS1068 4.6 55.5 1.0
CA A:GLY312 4.7 56.1 1.0
OE2 A:GLU1036 4.7 58.6 1.0
N A:GLY908 4.8 56.8 1.0
OE1 A:GLN951 4.8 60.1 1.0
N A:GLY311 4.8 59.0 1.0
CD A:GLN951 4.8 60.1 1.0
CE A:LYS911 4.8 54.2 1.0
HB3 A:SER310 4.9 59.9 1.0
CE1 A:HIS1068 4.9 55.5 1.0

Reference:

A.Harris, M.Wagner, D.Du, S.Raschka, L.M.Nentwig, H.Gohlke, S.H.J.Smits, B.F.Luisi, L.Schmitt. Structure and Efflux Mechanism of the Yeast Pleiotropic Drug Resistance Transporter PDR5. Nat Commun V. 12 5254 2021.
ISSN: ESSN 2041-1723
PubMed: 34489436
DOI: 10.1038/S41467-021-25574-8
Page generated: Thu Nov 25 10:37:04 2021

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