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Vanadium in PDB 7mpc: Structure of Ssoptp Bound to Vanadate

Protein crystallography data

The structure of Structure of Ssoptp Bound to Vanadate, PDB code: 7mpc was solved by J.A.Pinkston, K.J.Olsen, A.C.Hengge, S.J.Johnson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.29 / 1.75
Space group P 63
Cell size a, b, c (Å), α, β, γ (°) 84.582, 84.582, 42.346, 90, 90, 120
R / Rfree (%) 16.7 / 20.3

Vanadium Binding Sites:

The binding sites of Vanadium atom in the Structure of Ssoptp Bound to Vanadate (pdb code 7mpc). This binding sites where shown within 5.0 Angstroms radius around Vanadium atom.
In total only one binding site of Vanadium was determined in the Structure of Ssoptp Bound to Vanadate, PDB code: 7mpc:

Vanadium binding site 1 out of 1 in 7mpc

Go back to Vanadium Binding Sites List in 7mpc
Vanadium binding site 1 out of 1 in the Structure of Ssoptp Bound to Vanadate


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 1 of Structure of Ssoptp Bound to Vanadate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:V201

b:42.2
occ:1.00
V A:VO4201 0.0 42.2 1.0
O2 A:VO4201 1.9 34.5 1.0
O4 A:VO4201 1.9 34.9 1.0
O1 A:VO4201 1.9 39.7 1.0
O3 A:VO4201 1.9 37.8 1.0
HG A:CYS96 2.6 36.3 1.0
H A:GLY98 2.9 43.1 1.0
SG A:CYS96 3.0 30.1 1.0
H A:GLY101 3.0 37.8 1.0
HH21 A:ARG102 3.1 35.5 1.0
HE A:ARG102 3.1 34.0 1.0
H A:ARG102 3.2 31.7 1.0
OD1 A:ASP69 3.5 46.8 1.0
H A:VAL97 3.5 32.1 1.0
H A:ILE100 3.6 36.8 1.0
HB2 A:CYS96 3.7 32.9 1.0
N A:GLY98 3.7 35.8 1.0
N A:GLY101 3.8 31.3 1.0
H A:GLY99 3.9 37.1 1.0
O A:HOH338 3.9 45.7 1.0
HA3 A:GLY98 3.9 43.9 1.0
NH2 A:ARG102 3.9 29.4 1.0
HA3 A:GLY101 4.0 38.9 1.0
NE A:ARG102 4.0 28.2 1.0
HB2 A:ARG102 4.0 32.3 1.0
CB A:CYS96 4.0 27.2 1.0
N A:ARG102 4.1 26.2 1.0
OE1 A:GLN135 4.1 46.3 1.0
HB A:VAL97 4.1 41.5 1.0
O A:HOH334 4.2 34.9 1.0
N A:VAL97 4.2 26.6 1.0
O A:HOH358 4.3 41.0 1.0
CA A:GLY98 4.3 36.4 1.0
CA A:GLY101 4.3 32.3 1.0
HG3 A:ARG102 4.4 34.1 1.0
N A:GLY99 4.4 30.7 1.0
N A:ILE100 4.4 30.5 1.0
CZ A:ARG102 4.4 29.3 1.0
HB A:ILE100 4.6 45.5 1.0
HH22 A:ARG102 4.6 35.5 1.0
HB3 A:CYS96 4.6 32.9 1.0
CG A:ASP69 4.7 46.5 1.0
H A:THR103 4.7 31.0 1.0
C A:GLY98 4.7 34.0 1.0
CB A:ARG102 4.7 26.8 1.0
C A:GLY101 4.8 31.8 1.0
C A:VAL97 4.8 29.5 1.0
C A:ILE100 4.8 29.9 1.0
CA A:VAL97 4.8 31.1 1.0
CG A:ARG102 4.9 28.2 1.0
CB A:VAL97 4.9 34.4 1.0

Reference:

J.Pinkston, J.Jo, K.J.Olsen, D.Comer, C.A.Glaittli, J.P.Loria, S.J.Johnson, A.C.Hengge. Significant Loop Motions in the Ssoptp Protein Tyrosine Phosphatase Allow For Dual General Acid Functionality. Biochemistry 2021.
ISSN: ISSN 0006-2960
PubMed: 34496202
DOI: 10.1021/ACS.BIOCHEM.1C00365
Page generated: Fri Sep 24 16:40:04 2021

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