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Vanadium in PDB 7l0m: Vanadate-Bound Yoph G352T

Enzymatic activity of Vanadate-Bound Yoph G352T

All present enzymatic activity of Vanadate-Bound Yoph G352T:
3.1.3.48;

Protein crystallography data

The structure of Vanadate-Bound Yoph G352T, PDB code: 7l0m was solved by R.D.Shen, A.C.Hengge, S.J.Johnson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.15 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 49.231, 56.091, 98.302, 90, 90, 90
R / Rfree (%) 17.8 / 22.6

Vanadium Binding Sites:

The binding sites of Vanadium atom in the Vanadate-Bound Yoph G352T (pdb code 7l0m). This binding sites where shown within 5.0 Angstroms radius around Vanadium atom.
In total only one binding site of Vanadium was determined in the Vanadate-Bound Yoph G352T, PDB code: 7l0m:

Vanadium binding site 1 out of 1 in 7l0m

Go back to Vanadium Binding Sites List in 7l0m
Vanadium binding site 1 out of 1 in the Vanadate-Bound Yoph G352T


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 1 of Vanadate-Bound Yoph G352T within 5.0Å range:
probe atom residue distance (Å) B Occ
A:V501

b:31.8
occ:1.00
V A:VO4501 0.0 31.8 1.0
O2 A:VO4501 1.8 24.5 1.0
O4 A:VO4501 1.8 29.4 1.0
O1 A:VO4501 1.8 26.9 1.0
O3 A:VO4501 1.8 28.2 1.0
SG A:CYS403 2.8 27.4 1.0
OD2 A:ASP356 3.7 34.5 1.0
N A:GLY408 3.7 25.5 1.0
CB A:CYS403 3.8 21.5 1.0
NE A:ARG409 3.9 28.2 1.0
N A:ALA405 3.9 20.9 1.0
N A:ARG409 3.9 23.1 1.0
CA A:GLY408 3.9 23.7 1.0
NH2 A:ARG409 3.9 26.0 1.0
O A:HOH613 4.1 36.0 1.0
NE2 A:GLN446 4.1 32.0 1.0
N A:ARG404 4.2 24.1 1.0
N A:GLY406 4.2 23.9 1.0
CB A:ALA405 4.3 26.8 1.0
CZ A:ARG409 4.4 29.5 1.0
N A:VAL407 4.4 21.7 1.0
C A:GLY408 4.5 25.4 1.0
CA A:ALA405 4.5 22.0 1.0
CG A:ASP356 4.6 37.2 1.0
C A:ALA405 4.8 25.2 1.0
C A:VAL407 4.8 25.0 1.0
CB A:ARG404 4.9 22.9 1.0
C A:ARG404 4.9 24.9 1.0
OD1 A:ASP356 4.9 38.8 1.0
CA A:ARG404 4.9 23.1 1.0
CG A:ARG409 4.9 25.9 1.0
CB A:ARG409 4.9 22.0 1.0
CG2 A:VAL407 4.9 22.2 1.0
CD A:ARG409 5.0 28.0 1.0
O A:HOH698 5.0 34.5 1.0

Reference:

R.Shen, R.M.Crean, S.J.Johnson, S.C.L.Kamerlin, A.C.Hengge. Single Residue on the Wpd-Loop Affects the pH Dependency of Catalysis in Protein Tyrosine Phosphatases Jacs Au 2021.
DOI: 10.1021/JACSAU.1C00054
Page generated: Mon Jul 12 16:14:10 2021

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