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Vanadium in PDB 7d0a: Acinetobacter Mlafedb Complex in Adp-Vanadate Trapped Vclose Conformation

Vanadium Binding Sites:

The binding sites of Vanadium atom in the Acinetobacter Mlafedb Complex in Adp-Vanadate Trapped Vclose Conformation (pdb code 7d0a). This binding sites where shown within 5.0 Angstroms radius around Vanadium atom.
In total 2 binding sites of Vanadium where determined in the Acinetobacter Mlafedb Complex in Adp-Vanadate Trapped Vclose Conformation, PDB code: 7d0a:
Jump to Vanadium binding site number: 1; 2;

Vanadium binding site 1 out of 2 in 7d0a

Go back to Vanadium Binding Sites List in 7d0a
Vanadium binding site 1 out of 2 in the Acinetobacter Mlafedb Complex in Adp-Vanadate Trapped Vclose Conformation


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 1 of Acinetobacter Mlafedb Complex in Adp-Vanadate Trapped Vclose Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
B:V302

b:0.7
occ:1.00
V B:VO4302 0.0 0.7 1.0
O2 B:VO4302 1.0 0.7 1.0
O1 B:VO4302 1.0 0.7 1.0
O3 B:VO4302 1.0 0.7 1.0
O4 B:VO4302 1.0 0.7 1.0
O2B B:ADP301 2.9 0.6 1.0
NZ B:LYS52 3.0 0.3 1.0
O3B B:ADP301 3.2 0.6 1.0
PB B:ADP301 3.3 0.6 1.0
NE2 B:HIS208 3.6 0.1 1.0
O E:GLY179 3.7 1.0 1.0
O1B B:ADP301 3.7 0.6 1.0
CD2 B:HIS208 3.8 0.1 1.0
CE B:LYS52 3.9 0.3 1.0
OE2 B:GLU175 4.3 0.8 1.0
OG B:SER48 4.4 0.5 1.0
OD1 E:ASP181 4.5 0.1 1.0
CD B:LYS52 4.6 0.3 1.0
C E:GLY179 4.6 1.0 1.0
O3A B:ADP301 4.8 0.6 1.0
N E:GLY153 4.9 0.9 1.0
CE1 B:HIS208 4.9 0.1 1.0

Vanadium binding site 2 out of 2 in 7d0a

Go back to Vanadium Binding Sites List in 7d0a
Vanadium binding site 2 out of 2 in the Acinetobacter Mlafedb Complex in Adp-Vanadate Trapped Vclose Conformation


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 2 of Acinetobacter Mlafedb Complex in Adp-Vanadate Trapped Vclose Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
E:V302

b:0.6
occ:1.00
V E:VO4302 0.0 0.6 1.0
O2 E:VO4302 1.0 0.6 1.0
O3 E:VO4302 1.0 0.6 1.0
O1 E:VO4302 1.0 0.6 1.0
O4 E:VO4302 1.0 0.6 1.0
O2B E:ADP301 2.9 0.7 1.0
NZ E:LYS52 3.0 0.9 1.0
O3B E:ADP301 3.2 0.7 1.0
PB E:ADP301 3.3 0.7 1.0
NE2 E:HIS208 3.6 0.7 1.0
O1B E:ADP301 3.7 0.7 1.0
O B:GLY179 3.7 0.9 1.0
CD2 E:HIS208 3.8 0.7 1.0
CE E:LYS52 3.9 0.9 1.0
OE2 E:GLU175 4.3 91.8 1.0
OG E:SER48 4.4 0.3 1.0
CD E:LYS52 4.6 0.9 1.0
OD1 B:ASP181 4.6 1.0 1.0
C B:GLY179 4.7 0.9 1.0
N B:GLY153 4.7 0.0 1.0
O3A E:ADP301 4.8 0.7 1.0
CE1 E:HIS208 4.9 0.7 1.0

Reference:

Y.Y.Zhang, Q.X.Fan, X.M.Chi, Q.Zhou, Y.Y.Li. Cryo-Em Structures of Acinetobacter Baumannii Glycerophospholipid Transporter Cell Discov V. 6 2020.
ISSN: ESSN 2056-5968
DOI: 10.1038/S41421-020-00230-5
Page generated: Wed Dec 16 09:00:37 2020

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