Vanadium in PDB 7ch8: Cryo-Em Structure of P.Aeruginosa Mlafebd with Adp-V

The structure of Cryo-Em Structure of P.Aeruginosa Mlafebd with Adp-V also contains other interesting chemical elements:

Magnesium

(Mg)

2 atoms

The binding sites of Vanadium atom in the Cryo-Em Structure of P.Aeruginosa Mlafebd with Adp-V (pdb code 7ch8). This binding sites where shown within 5.0 Angstroms radius around Vanadium atom.
In total 2 binding sites of Vanadium where determined in the Cryo-Em Structure of P.Aeruginosa Mlafebd with Adp-V, PDB code: 7ch8:
Jump to Vanadium binding site number: 1; 2;

Vanadium binding site 1 out of 2 in the Cryo-Em Structure of P.Aeruginosa Mlafebd with Adp-V


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 1 of Cryo-Em Structure of P.Aeruginosa Mlafebd with Adp-V within 5.0Å range: probe atom residue distance (Å) B Occ I:V301 b:79.1 occ:1.00 VG I:AD9301 0.0 79.1 1.0 O2G I:AD9301 1.5 79.1 1.0 O3G I:AD9301 1.5 79.1 1.0 O1G I:AD9301 1.5 79.1 1.0 O3B I:AD9301 1.6 79.1 1.0 MG I:MG302 2.6 88.0 1.0 PB I:AD9301 2.8 79.1 1.0 O2B I:AD9301 3.1 79.1 1.0 O3A I:AD9301 3.4 79.1 1.0 CE I:LYS47 4.0 66.5 1.0 O1B I:AD9301 4.0 79.1 1.0 OG1 I:THR48 4.1 63.5 1.0 CE1 I:HIS203 4.2 64.2 1.0 O I:SER43 4.3 69.5 1.0 NZ I:LYS47 4.5 66.5 1.0 CB I:THR48 4.7 63.5 1.0 CA I:SER43 4.7 69.5 1.0 NE2 I:HIS203 4.9 64.2 1.0 PA I:AD9301 5.0 79.1 1.0

Vanadium binding site 2 out of 2 in the Cryo-Em Structure of P.Aeruginosa Mlafebd with Adp-V


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 2 of Cryo-Em Structure of P.Aeruginosa Mlafebd with Adp-V within 5.0Å range: probe atom residue distance (Å) B Occ J:V301 b:76.5 occ:1.00 VG J:AD9301 0.0 76.5 1.0 O3G J:AD9301 1.5 76.5 1.0 O2G J:AD9301 1.5 76.5 1.0 O1G J:AD9301 1.5 76.5 1.0 O3B J:AD9301 1.6 76.5 1.0 MG J:MG302 2.6 67.8 1.0 PB J:AD9301 2.8 76.5 1.0 O2B J:AD9301 3.0 76.5 1.0 O3A J:AD9301 3.3 76.5 1.0 NZ J:LYS47 3.6 64.1 1.0 O1B J:AD9301 4.0 76.5 1.0 N J:GLY44 4.1 71.1 1.0 CE J:LYS47 4.7 64.1 1.0 CA J:SER43 4.7 66.3 1.0 OG1 J:THR48 4.8 59.5 1.0 CD J:LYS47 4.8 64.1 1.0 C J:SER43 4.8 66.3 1.0 PA J:AD9301 4.9 76.5 1.0 CA J:GLY44 4.9 71.1 1.0 CB J:SER43 4.9 66.3 1.0

C.Zhou, H.Shi, M.Zhang, L.Zhou, L.Xiao, S.Feng, W.Im, M.Zhou, X.Zhang, Y.Huang. Structural Insight Into Phospholipid Transport By the Mlafebd Complex From P. Aeruginosa. J.Mol.Biol. V. 433 66986 2021.
ISSN: ESSN 1089-8638
PubMed: 33845086
DOI: 10.1016/J.JMB.2021.166986