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Vanadium in PDB 6ysy: Skeletal Myosin Bound to Mph-220, Mgadp-VO4

Protein crystallography data

The structure of Skeletal Myosin Bound to Mph-220, Mgadp-VO4, PDB code: 6ysy was solved by L.Canon, C.M.Kikuti, M.Gyimesi, A.Malnasi-Csizmadia, A.Houdusse, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 98.93 / 3.25
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 49.607, 119.424, 176.631, 90, 90, 90
R / Rfree (%) 21.8 / 23.2

Other elements in 6ysy:

The structure of Skeletal Myosin Bound to Mph-220, Mgadp-VO4 also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Vanadium Binding Sites:

The binding sites of Vanadium atom in the Skeletal Myosin Bound to Mph-220, Mgadp-VO4 (pdb code 6ysy). This binding sites where shown within 5.0 Angstroms radius around Vanadium atom.
In total only one binding site of Vanadium was determined in the Skeletal Myosin Bound to Mph-220, Mgadp-VO4, PDB code: 6ysy:

Vanadium binding site 1 out of 1 in 6ysy

Go back to Vanadium Binding Sites List in 6ysy
Vanadium binding site 1 out of 1 in the Skeletal Myosin Bound to Mph-220, Mgadp-VO4


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 1 of Skeletal Myosin Bound to Mph-220, Mgadp-VO4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:V2002

b:87.3
occ:1.00
V A:VO42002 0.0 87.3 1.0
O1 A:VO42002 1.8 91.5 1.0
O4 A:VO42002 1.8 91.0 1.0
O2 A:VO42002 1.8 90.8 1.0
O3 A:VO42002 1.8 90.5 1.0
O2B A:ADP2001 2.8 70.9 1.0
N A:GLY467 3.6 87.2 1.0
PB A:ADP2001 3.8 72.9 1.0
OG A:SER181 3.8 85.2 1.0
OG A:SER244 3.9 91.2 1.0
N A:SER245 3.9 90.1 1.0
NZ A:LYS185 3.9 81.4 1.0
CA A:SER181 4.0 82.0 1.0
MG A:MG2003 4.0 52.7 1.0
O3B A:ADP2001 4.1 71.6 1.0
O A:HOH2101 4.1 66.2 1.0
N A:GLY182 4.2 79.3 1.0
CA A:ALA466 4.3 88.3 1.0
CB A:SER181 4.3 82.6 1.0
ND2 A:ASN241 4.3 92.3 1.0
O A:SER245 4.3 91.8 1.0
O A:HOH2102 4.4 73.6 1.0
CA A:GLY467 4.4 87.9 1.0
C A:ALA466 4.5 87.4 1.0
CB A:SER245 4.5 90.0 1.0
O1B A:ADP2001 4.5 70.2 1.0
CE A:LYS185 4.5 79.5 1.0
CA A:SER244 4.5 87.5 1.0
C A:SER181 4.7 80.6 1.0
C A:SER244 4.7 89.5 1.0
CB A:SER244 4.7 88.0 1.0
CA A:SER245 4.7 90.5 1.0
OG A:SER245 4.8 91.4 1.0
CB A:ALA466 4.9 89.0 1.0
O A:ILE465 4.9 89.9 1.0
N A:SER181 4.9 82.7 1.0
O A:GLY467 5.0 88.9 1.0
C A:SER245 5.0 91.0 1.0

Reference:

M.Gyimesi, A.I.Horvath, D.Turos, S.K.Suthar, M.Penzes, C.Kurdi, L.Canon, C.Kikuti, K.M.Ruppel, D.V.Trivedi, J.A.Spudich, I.Lorincz, A.A.Rauscher, M.Kovacs, E.Pal, S.Komoly, A.Houdusse, A.Malnasi-Csizmadia. Single Residue Variation in Skeletal Muscle Myosin Enables Direct and Selective Drug Targeting For Spasticity and Muscle Stiffness. Cell V. 183 335 2020.
ISSN: ISSN 1097-4172
PubMed: 33035452
DOI: 10.1016/J.CELL.2020.08.050
Page generated: Sat Apr 3 18:03:43 2021

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