Atomistry » Vanadium » PDB 6raj-7k1l » 6xpa
Atomistry »
  Vanadium »
    PDB 6raj-7k1l »
      6xpa »

Vanadium in PDB 6xpa: Scoe with Oxovanadium and the Caba Substrate Bound and HIS299 and ARG157 Flipped Out

Protein crystallography data

The structure of Scoe with Oxovanadium and the Caba Substrate Bound and HIS299 and ARG157 Flipped Out, PDB code: 6xpa was solved by R.Jonnalagadda, C.L.Drennan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.74 / 2.10
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 61.82, 61.82, 167.483, 90, 90, 90
R / Rfree (%) 17.1 / 21.3

Other elements in 6xpa:

The structure of Scoe with Oxovanadium and the Caba Substrate Bound and HIS299 and ARG157 Flipped Out also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Vanadium Binding Sites:

The binding sites of Vanadium atom in the Scoe with Oxovanadium and the Caba Substrate Bound and HIS299 and ARG157 Flipped Out (pdb code 6xpa). This binding sites where shown within 5.0 Angstroms radius around Vanadium atom.
In total only one binding site of Vanadium was determined in the Scoe with Oxovanadium and the Caba Substrate Bound and HIS299 and ARG157 Flipped Out, PDB code: 6xpa:

Vanadium binding site 1 out of 1 in 6xpa

Go back to Vanadium Binding Sites List in 6xpa
Vanadium binding site 1 out of 1 in the Scoe with Oxovanadium and the Caba Substrate Bound and HIS299 and ARG157 Flipped Out


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 1 of Scoe with Oxovanadium and the Caba Substrate Bound and HIS299 and ARG157 Flipped Out within 5.0Å range:
probe atom residue distance (Å) B Occ
A:V402

b:47.9
occ:1.00
V1 A:VVO402 0.0 47.9 1.0
O1 A:VVO402 2.1 32.1 1.0
OD1 A:ASP134 2.5 28.2 1.0
NE2 A:HIS295 2.5 29.0 1.0
NE2 A:HIS132 2.7 22.9 1.0
O A:HOH625 3.0 34.0 1.0
O A:HOH628 3.1 38.8 1.0
CE1 A:HIS295 3.3 25.4 1.0
NH1 A:ARG310 3.4 24.2 1.0
CG A:ASP134 3.4 23.4 1.0
CD2 A:HIS132 3.6 18.9 1.0
CE1 A:HIS132 3.6 23.7 1.0
CD2 A:HIS295 3.7 23.7 1.0
OD2 A:ASP134 3.7 24.6 1.0
O A:HOH618 4.0 38.8 1.0
CA A:7UC401 4.3 29.2 1.0
ND1 A:HIS295 4.5 25.8 1.0
O A:HOH624 4.6 31.9 1.0
CZ A:ARG310 4.7 25.2 1.0
ND1 A:HIS132 4.7 22.1 1.0
C A:7UC401 4.7 25.2 1.0
CG A:HIS132 4.7 19.5 1.0
CG A:HIS295 4.7 23.4 1.0
CB A:ASP134 4.7 19.0 1.0
OXT A:7UC401 4.9 27.9 1.0
CD A:ARG310 4.9 19.7 1.0

Reference:

R.Jonnalagadda, A.Del Rio Flores, W.Cai, R.Mehmood, M.Narayanamoorthy, C.Ren, J.P.T.Zaragoza, H.J.Kulik, W.Zhang, C.L.Drennan. Biochemical and Crystallographic Investigations Into Isonitrile Formation By A Non-Heme Iron-Dependent Oxidase/Decarboxylase. J.Biol.Chem. 2020.
ISSN: ESSN 1083-351X
PubMed: 33361191
DOI: 10.1074/JBC.RA120.015932
Page generated: Mon Jan 25 16:05:46 2021

Last articles

Zn in 7L3L
Zn in 7KSO
Zn in 7KSR
Zn in 7KTP
Zn in 7LMM
Zn in 7LMK
Zn in 7LLZ
Zn in 7LLF
Zn in 7L0N
Zn in 7LBR
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy