Atomistry » Vanadium » PDB 6raj-7q0u » 6vwr
Atomistry »
  Vanadium »
    PDB 6raj-7q0u »
      6vwr »

Vanadium in PDB 6vwr: X-Ray Structure of Clavaminate Synthase with Vanadyl, Succinate, and Deoxyguanidinoproclavaminic Acid

Enzymatic activity of X-Ray Structure of Clavaminate Synthase with Vanadyl, Succinate, and Deoxyguanidinoproclavaminic Acid

All present enzymatic activity of X-Ray Structure of Clavaminate Synthase with Vanadyl, Succinate, and Deoxyguanidinoproclavaminic Acid:
1.14.11.21;

Protein crystallography data

The structure of X-Ray Structure of Clavaminate Synthase with Vanadyl, Succinate, and Deoxyguanidinoproclavaminic Acid, PDB code: 6vwr was solved by A.K.Boal, J.Vavra, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.50
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.288, 79.288, 105.573, 90, 90, 90
R / Rfree (%) 17.5 / 19.6

Vanadium Binding Sites:

The binding sites of Vanadium atom in the X-Ray Structure of Clavaminate Synthase with Vanadyl, Succinate, and Deoxyguanidinoproclavaminic Acid (pdb code 6vwr). This binding sites where shown within 5.0 Angstroms radius around Vanadium atom.
In total only one binding site of Vanadium was determined in the X-Ray Structure of Clavaminate Synthase with Vanadyl, Succinate, and Deoxyguanidinoproclavaminic Acid, PDB code: 6vwr:

Vanadium binding site 1 out of 1 in 6vwr

Go back to Vanadium Binding Sites List in 6vwr
Vanadium binding site 1 out of 1 in the X-Ray Structure of Clavaminate Synthase with Vanadyl, Succinate, and Deoxyguanidinoproclavaminic Acid


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 1 of X-Ray Structure of Clavaminate Synthase with Vanadyl, Succinate, and Deoxyguanidinoproclavaminic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:V403

b:13.0
occ:1.00
V1 A:VVO403 0.0 13.0 1.0
O1 A:VVO403 1.9 14.6 0.8
OE1 A:GLU146 2.0 11.4 1.0
O3 A:SIN401 2.1 13.4 1.0
NE2 A:HIS279 2.2 11.7 1.0
NE2 A:HIS144 2.2 11.4 1.0
O4 A:SIN401 2.3 19.5 1.0
C4 A:SIN401 2.6 17.3 1.0
CD A:GLU146 3.0 13.7 1.0
CE1 A:HIS144 3.1 12.5 1.0
CE1 A:HIS279 3.1 12.5 1.0
CD2 A:HIS279 3.1 11.5 1.0
CD2 A:HIS144 3.2 12.7 1.0
OE2 A:GLU146 3.3 13.1 1.0
C3 A:SIN401 4.1 16.9 1.0
ND1 A:HIS279 4.2 12.9 1.0
ND1 A:HIS144 4.2 14.1 1.0
NH1 A:ARG297 4.2 20.6 1.0
CG A:HIS279 4.3 9.9 1.0
CG A:HIS144 4.3 12.1 1.0
CG A:GLU146 4.4 11.4 1.0
C7 A:PCX402 4.6 18.2 0.9
C2 A:PCX402 4.7 18.7 0.9
CB A:GLU146 4.8 11.1 1.0
C4 A:PCX402 4.8 17.2 0.9
C2 A:SIN401 4.9 12.4 1.0
CD2 A:LEU141 5.0 14.6 1.0

Reference:

J.Vavra, N.P.Dunham, C.Krebs, A.K.Boal, J.M.Bollinger. X-Ray Structure of Clavaminate Synthase with Vanadyl, Succinate, and Deoxyguanidinoproclavaminic Acid To Be Published.
Page generated: Fri Oct 11 20:32:07 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy