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Vanadium in PDB 6vwr: X-Ray Structure of Clavaminate Synthase with Vanadyl, Succinate, and Deoxyguanidinoproclavaminic Acid

Enzymatic activity of X-Ray Structure of Clavaminate Synthase with Vanadyl, Succinate, and Deoxyguanidinoproclavaminic Acid

All present enzymatic activity of X-Ray Structure of Clavaminate Synthase with Vanadyl, Succinate, and Deoxyguanidinoproclavaminic Acid:
1.14.11.21;

Protein crystallography data

The structure of X-Ray Structure of Clavaminate Synthase with Vanadyl, Succinate, and Deoxyguanidinoproclavaminic Acid, PDB code: 6vwr was solved by A.K.Boal, J.Vavra, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.50
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.288, 79.288, 105.573, 90, 90, 90
R / Rfree (%) 17.5 / 19.6

Vanadium Binding Sites:

The binding sites of Vanadium atom in the X-Ray Structure of Clavaminate Synthase with Vanadyl, Succinate, and Deoxyguanidinoproclavaminic Acid (pdb code 6vwr). This binding sites where shown within 5.0 Angstroms radius around Vanadium atom.
In total only one binding site of Vanadium was determined in the X-Ray Structure of Clavaminate Synthase with Vanadyl, Succinate, and Deoxyguanidinoproclavaminic Acid, PDB code: 6vwr:

Vanadium binding site 1 out of 1 in 6vwr

Go back to Vanadium Binding Sites List in 6vwr
Vanadium binding site 1 out of 1 in the X-Ray Structure of Clavaminate Synthase with Vanadyl, Succinate, and Deoxyguanidinoproclavaminic Acid


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 1 of X-Ray Structure of Clavaminate Synthase with Vanadyl, Succinate, and Deoxyguanidinoproclavaminic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:V403

b:13.0
occ:1.00
V1 A:VVO403 0.0 13.0 1.0
O1 A:VVO403 1.9 14.6 0.8
OE1 A:GLU146 2.0 11.4 1.0
O3 A:SIN401 2.1 13.4 1.0
NE2 A:HIS279 2.2 11.7 1.0
NE2 A:HIS144 2.2 11.4 1.0
O4 A:SIN401 2.3 19.5 1.0
C4 A:SIN401 2.6 17.3 1.0
CD A:GLU146 3.0 13.7 1.0
CE1 A:HIS144 3.1 12.5 1.0
CE1 A:HIS279 3.1 12.5 1.0
CD2 A:HIS279 3.1 11.5 1.0
CD2 A:HIS144 3.2 12.7 1.0
OE2 A:GLU146 3.3 13.1 1.0
C3 A:SIN401 4.1 16.9 1.0
ND1 A:HIS279 4.2 12.9 1.0
ND1 A:HIS144 4.2 14.1 1.0
NH1 A:ARG297 4.2 20.6 1.0
CG A:HIS279 4.3 9.9 1.0
CG A:HIS144 4.3 12.1 1.0
CG A:GLU146 4.4 11.4 1.0
C7 A:PCX402 4.6 18.2 0.9
C2 A:PCX402 4.7 18.7 0.9
CB A:GLU146 4.8 11.1 1.0
C4 A:PCX402 4.8 17.2 0.9
C2 A:SIN401 4.9 12.4 1.0
CD2 A:LEU141 5.0 14.6 1.0

Reference:

J.Vavra, N.P.Dunham, C.Krebs, A.K.Boal, J.M.Bollinger. X-Ray Structure of Clavaminate Synthase with Vanadyl, Succinate, and Deoxyguanidinoproclavaminic Acid To Be Published.
Page generated: Wed Mar 3 15:46:00 2021

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