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Vanadium in PDB 6vwq: X-Ray Crystal Structure of Clavaminate Synthase with Vanadyl, Succinate, and Deoxyproclavaminic Acid

Enzymatic activity of X-Ray Crystal Structure of Clavaminate Synthase with Vanadyl, Succinate, and Deoxyproclavaminic Acid

All present enzymatic activity of X-Ray Crystal Structure of Clavaminate Synthase with Vanadyl, Succinate, and Deoxyproclavaminic Acid:
1.14.11.21;

Protein crystallography data

The structure of X-Ray Crystal Structure of Clavaminate Synthase with Vanadyl, Succinate, and Deoxyproclavaminic Acid, PDB code: 6vwq was solved by A.K.Boal, J.Vavra, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.47 / 1.50
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.213, 79.213, 105.45, 90, 90, 90
R / Rfree (%) 17.7 / 20.7

Vanadium Binding Sites:

The binding sites of Vanadium atom in the X-Ray Crystal Structure of Clavaminate Synthase with Vanadyl, Succinate, and Deoxyproclavaminic Acid (pdb code 6vwq). This binding sites where shown within 5.0 Angstroms radius around Vanadium atom.
In total only one binding site of Vanadium was determined in the X-Ray Crystal Structure of Clavaminate Synthase with Vanadyl, Succinate, and Deoxyproclavaminic Acid, PDB code: 6vwq:

Vanadium binding site 1 out of 1 in 6vwq

Go back to Vanadium Binding Sites List in 6vwq
Vanadium binding site 1 out of 1 in the X-Ray Crystal Structure of Clavaminate Synthase with Vanadyl, Succinate, and Deoxyproclavaminic Acid


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 1 of X-Ray Crystal Structure of Clavaminate Synthase with Vanadyl, Succinate, and Deoxyproclavaminic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:V401

b:10.8
occ:1.00
V1 A:VVO401 0.0 10.8 1.0
O1 A:VVO401 2.0 16.7 1.0
OE1 A:GLU146 2.0 11.6 1.0
O1 A:SIN402 2.1 12.4 1.0
NE2 A:HIS144 2.1 11.0 1.0
NE2 A:HIS279 2.2 11.6 1.0
O2 A:SIN402 2.3 17.3 1.0
C1 A:SIN402 2.6 15.9 1.0
CD A:GLU146 3.0 13.1 1.0
CE1 A:HIS144 3.1 9.4 1.0
CE1 A:HIS279 3.1 11.4 1.0
CD2 A:HIS144 3.1 10.0 1.0
CD2 A:HIS279 3.1 11.5 1.0
OE2 A:GLU146 3.3 13.2 1.0
C2 A:SIN402 4.1 19.1 1.0
ND1 A:HIS144 4.2 13.4 1.0
ND1 A:HIS279 4.2 11.6 1.0
CG A:HIS279 4.3 9.6 1.0
CG A:HIS144 4.3 12.4 1.0
NH1 A:ARG297 4.3 19.4 1.0
CG A:GLU146 4.4 11.1 1.0
CB A:GLU146 4.8 11.1 1.0
C3 A:SIN402 4.8 14.2 1.0
CAL A:RQJ403 4.8 21.7 0.9
CD2 A:LEU141 4.9 12.2 1.0

Reference:

J.Vavra, N.P.Dunham, C.Krebs, A.K.Boal, J.M.Bollinger. X-Ray Crystal Structure of Clavaminate Synthase with Vanadyl, Succinate, and Deoxyproclavaminic Acid To Be Published.
Page generated: Wed Mar 3 15:46:00 2021

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