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Vanadium in PDB 6mi8: Cryo-Em Structure of Vanadate-Trapped E.Coli LPTB2FGC

Vanadium Binding Sites:

The binding sites of Vanadium atom in the Cryo-Em Structure of Vanadate-Trapped E.Coli LPTB2FGC (pdb code 6mi8). This binding sites where shown within 5.0 Angstroms radius around Vanadium atom.
In total 2 binding sites of Vanadium where determined in the Cryo-Em Structure of Vanadate-Trapped E.Coli LPTB2FGC, PDB code: 6mi8:
Jump to Vanadium binding site number: 1; 2;

Vanadium binding site 1 out of 2 in 6mi8

Go back to Vanadium Binding Sites List in 6mi8
Vanadium binding site 1 out of 2 in the Cryo-Em Structure of Vanadate-Trapped E.Coli LPTB2FGC


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 1 of Cryo-Em Structure of Vanadate-Trapped E.Coli LPTB2FGC within 5.0Å range:
probe atom residue distance (Å) B Occ
A:V301

b:65.3
occ:1.00
VG A:AOV301 0.0 65.3 1.0
O4G A:AOV301 2.1 65.3 1.0
O3G A:AOV301 2.1 65.3 1.0
O1G A:AOV301 2.1 65.3 1.0
O2G A:AOV301 2.1 65.3 1.0
O3B A:AOV301 2.1 65.3 1.0
PB A:AOV301 3.2 65.3 1.0
OG B:SER139 3.2 71.3 1.0
O1B A:AOV301 3.3 65.3 1.0
O2B A:AOV301 3.8 65.3 1.0
OD1 A:ASN38 4.0 73.0 1.0
NE2 A:HIS195 4.0 81.0 1.0
N A:GLY39 4.2 67.0 1.0
NE2 A:GLN85 4.3 62.4 1.0
N B:GLY141 4.3 70.0 1.0
NZ A:LYS42 4.4 66.6 1.0
CA A:ASN38 4.4 73.0 1.0
CB B:SER139 4.4 71.3 1.0
O3A A:AOV301 4.6 65.3 1.0
OE2 A:GLU163 4.7 71.2 1.0
CE A:LYS42 4.7 66.6 1.0
O B:GLY167 4.7 68.6 1.0
N B:GLY140 4.7 65.7 1.0
CE1 A:HIS195 4.7 81.0 1.0
O A:PRO37 4.7 79.5 1.0
C A:ASN38 4.9 73.0 1.0
CG A:ASN38 4.9 73.0 1.0
CA B:GLY141 4.9 70.0 1.0
CB A:ASN38 4.9 73.0 1.0

Vanadium binding site 2 out of 2 in 6mi8

Go back to Vanadium Binding Sites List in 6mi8
Vanadium binding site 2 out of 2 in the Cryo-Em Structure of Vanadate-Trapped E.Coli LPTB2FGC


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 2 of Cryo-Em Structure of Vanadate-Trapped E.Coli LPTB2FGC within 5.0Å range:
probe atom residue distance (Å) B Occ
B:V301

b:59.8
occ:1.00
VG B:AOV301 0.0 59.8 1.0
O4G B:AOV301 2.1 59.8 1.0
O3B B:AOV301 2.1 59.8 1.0
O3G B:AOV301 2.1 59.8 1.0
O1G B:AOV301 2.1 59.8 1.0
O2G B:AOV301 2.1 59.8 1.0
OG A:SER139 2.8 60.6 1.0
PB B:AOV301 3.1 59.8 1.0
O3A B:AOV301 3.5 59.8 1.0
O2B B:AOV301 3.7 59.8 1.0
CB A:SER139 4.0 60.6 1.0
NE2 B:HIS195 4.1 78.2 1.0
NE2 B:GLN85 4.1 64.8 1.0
NZ B:LYS42 4.3 60.4 1.0
OD1 B:ASN38 4.3 63.6 1.0
N B:GLY39 4.3 65.8 1.0
O1B B:AOV301 4.4 59.8 1.0
N A:GLY140 4.4 61.5 1.0
N A:GLY141 4.4 63.8 1.0
CE B:LYS42 4.5 60.4 1.0
CA B:ASN38 4.6 63.6 1.0
OE2 B:GLU163 4.6 79.6 1.0
O B:PRO37 4.8 67.7 1.0
CE1 B:HIS195 4.9 78.2 1.0

Reference:

Y.Li, B.J.Orlando, M.Liao. Structural Basis of Lipopolysaccharide Extraction By the LPTB2FGC Complex. Nature V. 567 486 2019.
ISSN: ESSN 1476-4687
PubMed: 30894744
DOI: 10.1038/S41586-019-1025-6
Page generated: Wed Dec 16 02:31:53 2020

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