Atomistry » Vanadium » PDB 4zi4-6py9 » 6dr7
Atomistry »
  Vanadium »
    PDB 4zi4-6py9 »
      6dr7 »

Vanadium in PDB 6dr7: Yoph PTP1B Wpd Loop Chimera 2 Ptpase Bound to Vanadate

Protein crystallography data

The structure of Yoph PTP1B Wpd Loop Chimera 2 Ptpase Bound to Vanadate, PDB code: 6dr7 was solved by G.Moise, Y.Morales, S.J.Johnson, A.C.Hengge, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.19 / 1.85
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 49.697, 54.731, 96.537, 90.00, 90.00, 90.00
R / Rfree (%) 17.4 / 20.8

Vanadium Binding Sites:

The binding sites of Vanadium atom in the Yoph PTP1B Wpd Loop Chimera 2 Ptpase Bound to Vanadate (pdb code 6dr7). This binding sites where shown within 5.0 Angstroms radius around Vanadium atom.
In total only one binding site of Vanadium was determined in the Yoph PTP1B Wpd Loop Chimera 2 Ptpase Bound to Vanadate, PDB code: 6dr7:

Vanadium binding site 1 out of 1 in 6dr7

Go back to Vanadium Binding Sites List in 6dr7
Vanadium binding site 1 out of 1 in the Yoph PTP1B Wpd Loop Chimera 2 Ptpase Bound to Vanadate


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 1 of Yoph PTP1B Wpd Loop Chimera 2 Ptpase Bound to Vanadate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:V502

b:36.8
occ:1.00
V A:VO4502 0.0 36.8 1.0
O4 A:VO4502 2.0 28.5 1.0
O2 A:VO4502 2.0 32.9 1.0
O3 A:VO4502 2.1 41.7 1.0
O1 A:VO4502 2.1 34.6 1.0
SG A:CYS403 2.6 23.1 1.0
O A:HOH601 3.0 35.0 1.0
CB A:CYS403 3.5 22.0 1.0
OXT A:ACT501 3.7 61.6 1.0
O A:HOH614 3.7 47.0 1.0
N A:GLY408 3.8 23.8 1.0
H3 A:ACT501 3.9 72.6 1.0
O A:HOH653 4.0 32.9 1.0
N A:ARG404 4.0 24.9 1.0
CA A:GLY408 4.1 23.3 1.0
N A:ALA405 4.1 26.2 1.0
N A:ARG409 4.1 21.5 1.0
H2 A:ACT501 4.3 72.6 1.0
N A:GLY406 4.4 22.5 1.0
CH3 A:ACT501 4.4 60.5 1.0
C A:ACT501 4.5 61.3 1.0
N A:VAL407 4.5 21.8 1.0
C A:GLY408 4.6 23.1 1.0
CB A:ALA405 4.7 25.6 1.0
CA A:CYS403 4.7 24.3 1.0
CB A:ARG404 4.7 26.5 1.0
CA A:ARG404 4.8 24.7 1.0
NE2 A:GLN446 4.8 33.0 1.0
CA A:ALA405 4.8 26.0 1.0
C A:CYS403 4.8 26.0 1.0
C A:ARG404 4.9 29.4 1.0
C A:VAL407 4.9 22.4 1.0
CB A:ARG409 5.0 26.5 1.0

Reference:

G.Moise, Y.Morales, V.Beaumont, T.Caradonna, J.P.Loria, S.J.Johnson, A.C.Hengge. A Yoph PTP1B Chimera Shows the Importance of the Wpd-Loop Sequence to the Activity, Structure, and Dynamics of Protein Tyrosine Phosphatases. Biochemistry V. 57 5315 2018.
ISSN: ISSN 1520-4995
PubMed: 30110154
DOI: 10.1021/ACS.BIOCHEM.8B00663
Page generated: Wed Dec 16 02:31:40 2020

Last articles

Zn in 7L3L
Zn in 7KSO
Zn in 7KSR
Zn in 7KTP
Zn in 7LMM
Zn in 7LMK
Zn in 7LLZ
Zn in 7LLF
Zn in 7L0N
Zn in 7LBR
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy