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Vanadium in PDB 6dr7: Yoph PTP1B Wpd Loop Chimera 2 Ptpase Bound to Vanadate

Protein crystallography data

The structure of Yoph PTP1B Wpd Loop Chimera 2 Ptpase Bound to Vanadate, PDB code: 6dr7 was solved by G.Moise, Y.Morales, S.J.Johnson, A.C.Hengge, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.19 / 1.85
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 49.697, 54.731, 96.537, 90.00, 90.00, 90.00
R / Rfree (%) 17.4 / 20.8

Vanadium Binding Sites:

The binding sites of Vanadium atom in the Yoph PTP1B Wpd Loop Chimera 2 Ptpase Bound to Vanadate (pdb code 6dr7). This binding sites where shown within 5.0 Angstroms radius around Vanadium atom.
In total only one binding site of Vanadium was determined in the Yoph PTP1B Wpd Loop Chimera 2 Ptpase Bound to Vanadate, PDB code: 6dr7:

Vanadium binding site 1 out of 1 in 6dr7

Go back to Vanadium Binding Sites List in 6dr7
Vanadium binding site 1 out of 1 in the Yoph PTP1B Wpd Loop Chimera 2 Ptpase Bound to Vanadate


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 1 of Yoph PTP1B Wpd Loop Chimera 2 Ptpase Bound to Vanadate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:V502

b:36.8
occ:1.00
V A:VO4502 0.0 36.8 1.0
O4 A:VO4502 2.0 28.5 1.0
O2 A:VO4502 2.0 32.9 1.0
O3 A:VO4502 2.1 41.7 1.0
O1 A:VO4502 2.1 34.6 1.0
SG A:CYS403 2.6 23.1 1.0
O A:HOH601 3.0 35.0 1.0
CB A:CYS403 3.5 22.0 1.0
OXT A:ACT501 3.7 61.6 1.0
O A:HOH614 3.7 47.0 1.0
N A:GLY408 3.8 23.8 1.0
H3 A:ACT501 3.9 72.6 1.0
O A:HOH653 4.0 32.9 1.0
N A:ARG404 4.0 24.9 1.0
CA A:GLY408 4.1 23.3 1.0
N A:ALA405 4.1 26.2 1.0
N A:ARG409 4.1 21.5 1.0
H2 A:ACT501 4.3 72.6 1.0
N A:GLY406 4.4 22.5 1.0
CH3 A:ACT501 4.4 60.5 1.0
C A:ACT501 4.5 61.3 1.0
N A:VAL407 4.5 21.8 1.0
C A:GLY408 4.6 23.1 1.0
CB A:ALA405 4.7 25.6 1.0
CA A:CYS403 4.7 24.3 1.0
CB A:ARG404 4.7 26.5 1.0
CA A:ARG404 4.8 24.7 1.0
NE2 A:GLN446 4.8 33.0 1.0
CA A:ALA405 4.8 26.0 1.0
C A:CYS403 4.8 26.0 1.0
C A:ARG404 4.9 29.4 1.0
C A:VAL407 4.9 22.4 1.0
CB A:ARG409 5.0 26.5 1.0

Reference:

G.Moise, Y.Morales, V.Beaumont, T.Caradonna, J.P.Loria, S.J.Johnson, A.C.Hengge. A Yoph PTP1B Chimera Shows the Importance of the Wpd-Loop Sequence to the Activity, Structure, and Dynamics of Protein Tyrosine Phosphatases. Biochemistry V. 57 5315 2018.
ISSN: ISSN 1520-4995
PubMed: 30110154
DOI: 10.1021/ACS.BIOCHEM.8B00663
Page generated: Wed Dec 16 02:31:40 2020

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