Vanadium in PDB 6db2: X-Ray Crystal Structure of Vioc Bound to Vanadyl Ion, L-Homoarginine, and Succinate

All present enzymatic activity of X-Ray Crystal Structure of Vioc Bound to Vanadyl Ion, L-Homoarginine, and Succinate:
1.14.11.41;

The structure of X-Ray Crystal Structure of Vioc Bound to Vanadyl Ion, L-Homoarginine, and Succinate, PDB code: 6db2 was solved by N.P.Dunham, A.J.Mitchell, A.K.Boal, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	59.61 / 1.70
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	81.025, 66.637, 63.224, 90.00, 109.47, 90.00
R / Rfree (%)	17.5 / 20

The binding sites of Vanadium atom in the X-Ray Crystal Structure of Vioc Bound to Vanadyl Ion, L-Homoarginine, and Succinate (pdb code 6db2). This binding sites where shown within 5.0 Angstroms radius around Vanadium atom.
In total only one binding site of Vanadium was determined in the X-Ray Crystal Structure of Vioc Bound to Vanadyl Ion, L-Homoarginine, and Succinate, PDB code: 6db2:

Vanadium binding site 1 out of 1 in the X-Ray Crystal Structure of Vioc Bound to Vanadyl Ion, L-Homoarginine, and Succinate


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 1 of X-Ray Crystal Structure of Vioc Bound to Vanadyl Ion, L-Homoarginine, and Succinate within 5.0Å range: probe atom residue distance (Å) B Occ A:V403 b:9.0 occ:1.00 V1 A:VVO403 0.0 9.0 1.0 O1 A:VVO403 1.7 12.7 1.0 OE1 A:GLU170 2.0 9.8 1.0 O4 A:SIN401 2.1 13.8 1.0 NE2 A:HIS316 2.2 8.6 1.0 NE2 A:HIS168 2.2 9.0 1.0 O3 A:SIN401 2.5 16.8 1.0 C4 A:SIN401 2.6 14.8 1.0 CE1 A:HIS316 3.0 8.6 1.0 CD A:GLU170 3.0 9.8 1.0 CE1 A:HIS168 3.2 9.0 1.0 CD2 A:HIS316 3.2 8.5 1.0 CD2 A:HIS168 3.3 9.0 1.0 OE2 A:GLU170 3.4 10.1 1.0 ND1 A:HIS316 4.1 8.5 1.0 C3 A:SIN401 4.1 14.2 1.0 NH1 A:ARG334 4.2 12.5 1.0 CG A:HIS316 4.2 8.4 1.0 ND1 A:HIS168 4.3 8.7 1.0 CG A:HIS168 4.4 8.8 1.0 CG A:GLU170 4.4 9.3 1.0 CB A:HRG402 4.6 14.1 1.0 CB A:GLU170 4.7 9.1 1.0 N A:HRG402 4.8 14.6 1.0 CG' A:HRG402 4.9 13.5 1.0 C2 A:SIN401 4.9 13.5 1.0 CD2 A:LEU165 4.9 9.7 1.0 CG A:HRG402 5.0 13.1 1.0 CA A:GLU170 5.0 8.8 1.0

N.P.Dunham, W.C.Chang, A.J.Mitchell, R.J.Martinie, B.Zhang, J.A.Bergman, L.J.Rajakovich, B.Wang, A.Silakov, C.Krebs, A.K.Boal, J.M.Bollinger. Two Distinct Mechanisms For C-C Desaturation By Iron(II)- and 2-(Oxo)Glutarate-Dependent Oxygenases: Importance of Alpha-Heteroatom Assistance. J. Am. Chem. Soc. V. 140 7116 2018.
ISSN: ESSN 1520-5126
PubMed: 29708749
DOI: 10.1021/JACS.8B01933