Atomistry » Vanadium » PDB 4zi4-6py9 » 5aa6
Atomistry »
  Vanadium »
    PDB 4zi4-6py9 »
      5aa6 »

Vanadium in PDB 5aa6: Homohexameric Structure of the Second Vanadate-Dependent Bromoperoxidase (Anii) From Ascophyllum Nodosum

Enzymatic activity of Homohexameric Structure of the Second Vanadate-Dependent Bromoperoxidase (Anii) From Ascophyllum Nodosum

All present enzymatic activity of Homohexameric Structure of the Second Vanadate-Dependent Bromoperoxidase (Anii) From Ascophyllum Nodosum:
1.11.1.18;

Protein crystallography data

The structure of Homohexameric Structure of the Second Vanadate-Dependent Bromoperoxidase (Anii) From Ascophyllum Nodosum, PDB code: 5aa6 was solved by M.Radlow, A.Jeudy, J.Dabin, L.Delage, C.Leblanc, J.Hartung, M.Czjzek, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 70.00 / 2.26
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 67.790, 236.840, 118.000, 90.00, 93.74, 90.00
R / Rfree (%) 17 / 23.6

Vanadium Binding Sites:

The binding sites of Vanadium atom in the Homohexameric Structure of the Second Vanadate-Dependent Bromoperoxidase (Anii) From Ascophyllum Nodosum (pdb code 5aa6). This binding sites where shown within 5.0 Angstroms radius around Vanadium atom.
In total 6 binding sites of Vanadium where determined in the Homohexameric Structure of the Second Vanadate-Dependent Bromoperoxidase (Anii) From Ascophyllum Nodosum, PDB code: 5aa6:
Jump to Vanadium binding site number: 1; 2; 3; 4; 5; 6;

Vanadium binding site 1 out of 6 in 5aa6

Go back to Vanadium Binding Sites List in 5aa6
Vanadium binding site 1 out of 6 in the Homohexameric Structure of the Second Vanadate-Dependent Bromoperoxidase (Anii) From Ascophyllum Nodosum


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 1 of Homohexameric Structure of the Second Vanadate-Dependent Bromoperoxidase (Anii) From Ascophyllum Nodosum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:V800

b:19.2
occ:0.90
 V A:VO4800 0.0 19.2 0.9
O2 A:VO4800 1.9 16.1 1.0
O4 A:VO4800 1.9 16.1 1.0
O3 A:VO4800 1.9 16.8 1.0
O1 A:VO4800 1.9 16.5 0.9
NE2 A:HIS536 2.9 10.4 1.0
NH2 A:ARG530 3.4 10.1 1.0
NE2 A:HIS444 3.7 8.6 1.0
N A:GLY450 3.8 9.0 1.0
CD2 A:HIS536 3.8 10.3 1.0
NE A:ARG530 3.8 10.2 1.0
CE1 A:HIS536 3.9 10.2 1.0
CZ A:ARG530 4.0 10.4 1.0
ND1 A:HIS451 4.0 10.1 1.0
OG A:SER449 4.1 10.4 1.0
NH2 A:ARG382 4.1 8.9 1.0
NZ A:LYS374 4.1 8.0 1.0
O A:HOH2351 4.2 5.3 1.0
NH1 A:ARG382 4.2 9.2 1.0
CE1 A:HIS444 4.4 8.7 1.0
N A:HIS451 4.4 8.9 1.0
CA A:SER449 4.4 9.6 1.0
CA A:GLY450 4.4 8.7 1.0
C A:SER449 4.5 9.4 1.0
CZ A:ARG382 4.6 9.3 1.0
CG A:PRO442 4.6 10.8 1.0
CB A:SER449 4.6 10.0 1.0
CD2 A:HIS444 4.7 8.7 1.0
O A:HOH2431 4.8 16.6 1.0
CE1 A:HIS451 4.8 10.1 1.0
CE A:LYS374 4.9 8.0 1.0
C A:GLY450 4.9 8.7 1.0

Vanadium binding site 2 out of 6 in 5aa6

Go back to Vanadium Binding Sites List in 5aa6
Vanadium binding site 2 out of 6 in the Homohexameric Structure of the Second Vanadate-Dependent Bromoperoxidase (Anii) From Ascophyllum Nodosum


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 2 of Homohexameric Structure of the Second Vanadate-Dependent Bromoperoxidase (Anii) From Ascophyllum Nodosum within 5.0Å range:
probe atom residue distance (Å) B Occ
B:V800

b:29.1
occ:1.00
 V B:VO4800 0.0 29.1 1.0
O2 B:VO4800 1.9 25.3 1.0
O4 B:VO4800 1.9 27.5 1.0
O3 B:VO4800 1.9 26.9 1.0
O1 B:VO4800 1.9 26.4 1.0
NE2 B:HIS536 3.1 12.7 1.0
NH2 B:ARG530 3.4 12.3 1.0
NE2 B:HIS444 3.6 13.5 1.0
N B:GLY450 3.6 14.4 1.0
ND1 B:HIS451 3.8 14.9 1.0
NE B:ARG530 3.8 12.6 1.0
CD2 B:HIS536 3.9 12.1 1.0
OG B:SER449 4.0 15.3 1.0
CZ B:ARG530 4.0 12.7 1.0
CE1 B:HIS536 4.1 12.4 1.0
NH2 B:ARG382 4.2 13.0 1.0
CA B:SER449 4.2 15.0 1.0
N B:HIS451 4.3 13.9 1.0
NZ B:LYS374 4.3 12.6 1.0
CE1 B:HIS444 4.4 13.6 1.0
O B:HOH2282 4.4 5.9 1.0
NH1 B:ARG382 4.4 13.4 1.0
C B:SER449 4.4 14.5 1.0
CA B:GLY450 4.4 14.0 1.0
CB B:SER449 4.4 15.1 1.0
CE1 B:HIS451 4.5 15.0 1.0
CD2 B:HIS444 4.6 13.6 1.0
CG B:PRO442 4.7 15.3 1.0
CZ B:ARG382 4.8 13.7 1.0
CG B:HIS451 4.8 14.8 1.0
O B:HOH2338 4.9 22.7 1.0
C B:GLY450 4.9 13.9 1.0
CD B:ARG530 5.0 12.3 1.0

Vanadium binding site 3 out of 6 in 5aa6

Go back to Vanadium Binding Sites List in 5aa6
Vanadium binding site 3 out of 6 in the Homohexameric Structure of the Second Vanadate-Dependent Bromoperoxidase (Anii) From Ascophyllum Nodosum


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 3 of Homohexameric Structure of the Second Vanadate-Dependent Bromoperoxidase (Anii) From Ascophyllum Nodosum within 5.0Å range:
probe atom residue distance (Å) B Occ
C:V800

b:32.0
occ:1.00
 V C:VO4800 0.0 32.0 1.0
O2 C:VO4800 1.9 28.7 1.0
O4 C:VO4800 1.9 27.8 1.0
O3 C:VO4800 1.9 27.2 1.0
O1 C:VO4800 1.9 27.8 1.0
NE2 C:HIS536 3.2 15.9 1.0
NE2 C:HIS444 3.5 14.6 1.0
NH2 C:ARG530 3.6 14.9 1.0
ND1 C:HIS451 3.7 14.5 1.0
N C:GLY450 3.8 14.1 1.0
CD2 C:HIS536 3.9 15.7 1.0
NE C:ARG530 3.9 14.1 1.0
O C:HOH2247 4.1 9.3 1.0
NH2 C:ARG382 4.1 16.9 1.0
NZ C:LYS374 4.2 15.7 1.0
CE1 C:HIS444 4.2 14.6 1.0
CZ C:ARG530 4.2 14.9 1.0
CE1 C:HIS536 4.3 16.1 1.0
N C:HIS451 4.3 14.1 1.0
NH1 C:ARG382 4.3 16.0 1.0
CA C:SER449 4.4 14.3 1.0
CA C:GLY450 4.5 13.8 1.0
CE1 C:HIS451 4.5 14.0 1.0
CD2 C:HIS444 4.5 14.8 1.0
OG C:SER449 4.5 13.4 1.0
C C:SER449 4.5 14.6 1.0
CG C:PRO442 4.7 17.4 1.0
CB C:SER449 4.7 14.1 1.0
CZ C:ARG382 4.7 17.1 1.0
CG C:HIS451 4.8 14.2 1.0
O C:HOH2249 4.8 14.7 0.9
C C:GLY450 4.9 14.4 1.0

Vanadium binding site 4 out of 6 in 5aa6

Go back to Vanadium Binding Sites List in 5aa6
Vanadium binding site 4 out of 6 in the Homohexameric Structure of the Second Vanadate-Dependent Bromoperoxidase (Anii) From Ascophyllum Nodosum


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 4 of Homohexameric Structure of the Second Vanadate-Dependent Bromoperoxidase (Anii) From Ascophyllum Nodosum within 5.0Å range:
probe atom residue distance (Å) B Occ
D:V800

b:26.3
occ:1.00
 V D:VO4800 0.0 26.3 1.0
O2 D:VO4800 1.9 23.7 1.0
O3 D:VO4800 1.9 23.3 1.0
O4 D:VO4800 1.9 25.0 1.0
O1 D:VO4800 1.9 24.1 1.0
NE2 D:HIS536 3.0 19.0 1.0
NE2 D:HIS444 3.6 10.8 1.0
N D:GLY450 3.6 12.5 1.0
NH2 D:ARG530 3.7 12.2 1.0
ND1 D:HIS451 3.9 11.1 1.0
CD2 D:HIS536 3.9 18.6 1.0
NE D:ARG530 3.9 12.2 1.0
CE1 D:HIS536 3.9 18.7 1.0
O D:HOH2355 4.0 11.1 1.0
NH2 D:ARG382 4.1 16.1 1.0
CZ D:ARG530 4.1 12.7 1.0
N D:HIS451 4.2 10.9 1.0
NZ D:LYS374 4.2 14.0 1.0
OG D:SER449 4.2 13.3 1.0
CA D:GLY450 4.3 11.8 1.0
NH1 D:ARG382 4.3 16.4 1.0
CE1 D:HIS444 4.4 11.2 1.0
CA D:SER449 4.4 13.1 1.0
C D:SER449 4.5 12.8 1.0
CD2 D:HIS444 4.6 11.1 1.0
CE1 D:HIS451 4.6 10.6 1.0
CZ D:ARG382 4.7 16.1 1.0
CG D:PRO442 4.8 13.1 1.0
C D:GLY450 4.8 11.1 1.0
CB D:SER449 4.8 13.0 1.0
CE D:LYS374 4.8 14.4 1.0
CG D:HIS451 4.9 10.9 1.0

Vanadium binding site 5 out of 6 in 5aa6

Go back to Vanadium Binding Sites List in 5aa6
Vanadium binding site 5 out of 6 in the Homohexameric Structure of the Second Vanadate-Dependent Bromoperoxidase (Anii) From Ascophyllum Nodosum


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 5 of Homohexameric Structure of the Second Vanadate-Dependent Bromoperoxidase (Anii) From Ascophyllum Nodosum within 5.0Å range:
probe atom residue distance (Å) B Occ
E:V800

b:20.2
occ:0.90
 V E:VO4800 0.0 20.2 0.9
O4 E:VO4800 1.9 18.7 0.9
O2 E:VO4800 1.9 18.7 0.9
O1 E:VO4800 1.9 19.6 0.8
O3 E:VO4800 1.9 18.0 0.8
NE2 E:HIS536 3.1 12.1 1.0
NH2 E:ARG530 3.4 9.2 1.0
NE2 E:HIS444 3.5 11.5 1.0
N E:GLY450 3.7 9.2 1.0
ND1 E:HIS451 4.0 9.4 1.0
NE E:ARG530 4.0 9.5 1.0
NH2 E:ARG382 4.0 12.8 1.0
CD2 E:HIS536 4.0 11.8 1.0
CE1 E:HIS536 4.1 12.2 1.0
CZ E:ARG530 4.1 9.3 1.0
NZ E:LYS374 4.1 10.4 1.0
O E:HOH2231 4.1 20.9 1.0
NH1 E:ARG382 4.3 12.3 1.0
CE1 E:HIS444 4.3 11.4 1.0
OG E:SER449 4.3 10.0 1.0
CA E:GLY450 4.4 9.2 1.0
N E:HIS451 4.4 8.9 1.0
CA E:SER449 4.4 9.8 1.0
CD2 E:HIS444 4.5 11.6 1.0
C E:SER449 4.5 9.7 1.0
CE1 E:HIS451 4.6 8.8 1.0
CZ E:ARG382 4.6 12.5 1.0
CG E:PRO442 4.8 12.0 1.0
O E:HOH2298 4.8 39.0 1.0
CB E:SER449 4.8 9.9 1.0
CE E:LYS374 4.9 10.9 1.0
C E:GLY450 4.9 9.0 1.0
O E:HOH2299 5.0 17.5 1.0

Vanadium binding site 6 out of 6 in 5aa6

Go back to Vanadium Binding Sites List in 5aa6
Vanadium binding site 6 out of 6 in the Homohexameric Structure of the Second Vanadate-Dependent Bromoperoxidase (Anii) From Ascophyllum Nodosum


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 6 of Homohexameric Structure of the Second Vanadate-Dependent Bromoperoxidase (Anii) From Ascophyllum Nodosum within 5.0Å range:
probe atom residue distance (Å) B Occ
F:V800

b:24.0
occ:1.00
 V F:VO4800 0.0 24.0 1.0
O3 F:VO4800 1.9 22.4 1.0
O4 F:VO4800 1.9 23.5 1.0
O2 F:VO4800 1.9 21.8 1.0
O1 F:VO4800 1.9 22.0 1.0
NE2 F:HIS536 2.9 11.5 1.0
NH2 F:ARG530 3.6 10.3 1.0
N F:GLY450 3.7 12.2 1.0
NE2 F:HIS444 3.7 11.6 1.0
CD2 F:HIS536 3.8 11.4 1.0
OG F:SER449 3.9 12.7 1.0
ND1 F:HIS451 3.9 12.2 1.0
NE F:ARG530 3.9 9.8 1.0
CE1 F:HIS536 3.9 11.5 1.0
O F:HOH2260 4.1 7.9 1.0
NH2 F:ARG382 4.1 16.2 1.0
N F:HIS451 4.2 11.3 1.0
CZ F:ARG530 4.2 10.3 1.0
CA F:SER449 4.3 12.3 1.0
NH1 F:ARG382 4.3 14.6 1.0
CA F:GLY450 4.3 11.3 1.0
CE1 F:HIS444 4.3 11.1 1.0
NZ F:LYS374 4.4 13.3 1.0
C F:SER449 4.4 12.3 1.0
CB F:SER449 4.6 12.7 1.0
O F:HOH2333 4.7 14.8 0.6
CE1 F:HIS451 4.7 11.8 1.0
CZ F:ARG382 4.7 15.6 1.0
CG F:PRO442 4.8 11.0 1.0
C F:GLY450 4.8 11.3 1.0
CD2 F:HIS444 4.8 11.6 1.0
CG F:HIS451 4.8 11.4 1.0
O F:HOH2332 4.9 18.0 0.9
CE F:LYS374 4.9 13.3 1.0
CB F:HIS451 5.0 11.4 1.0

Reference:

M.Radlow, M.Czjzek, A.Jeudy, J.Dabin, L.Delage, C.Leblanc, J.Hartung. Homohexameric Structure of the Second Vanadate Dependant Bromoperoxidase From Ascophyllum Nodosum To Be Published.
Page generated: Fri Oct 11 19:55:45 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy