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Vanadium in PDB 4e7z: Myosin VI (Md) Pre-Powerstroke State, P21 Crystal Form

Protein crystallography data

The structure of Myosin VI (Md) Pre-Powerstroke State, P21 Crystal Form, PDB code: 4e7z was solved by T.Isabet, H.L.Sweeney, A.Houdusse, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.65 / 2.30
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 98.148, 93.319, 101.875, 90.00, 90.60, 90.00
R / Rfree (%) 17.6 / 23.1

Other elements in 4e7z:

The structure of Myosin VI (Md) Pre-Powerstroke State, P21 Crystal Form also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Vanadium Binding Sites:

The binding sites of Vanadium atom in the Myosin VI (Md) Pre-Powerstroke State, P21 Crystal Form (pdb code 4e7z). This binding sites where shown within 5.0 Angstroms radius around Vanadium atom.
In total 2 binding sites of Vanadium where determined in the Myosin VI (Md) Pre-Powerstroke State, P21 Crystal Form, PDB code: 4e7z:
Jump to Vanadium binding site number: 1; 2;

Vanadium binding site 1 out of 2 in 4e7z

Go back to Vanadium Binding Sites List in 4e7z
Vanadium binding site 1 out of 2 in the Myosin VI (Md) Pre-Powerstroke State, P21 Crystal Form


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 1 of Myosin VI (Md) Pre-Powerstroke State, P21 Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:V802

b:22.7
occ:1.00
V A:VO4802 0.0 22.7 1.0
O2 A:VO4802 1.8 26.5 1.0
O4 A:VO4802 1.9 25.5 1.0
O3 A:VO4802 1.9 23.8 1.0
O1 A:VO4802 1.9 27.5 1.0
O2B A:ADP801 2.3 26.1 1.0
PB A:ADP801 3.4 24.5 1.0
O1B A:ADP801 3.6 20.7 1.0
OG A:SER203 3.9 29.3 1.0
O A:HOH979 3.9 26.0 1.0
N A:SER204 3.9 26.1 1.0
MG A:MG803 3.9 32.4 1.0
ND2 A:ASN200 3.9 21.9 1.0
OG A:SER153 3.9 25.8 1.0
CA A:SER153 4.0 24.5 1.0
N A:GLY459 4.1 22.8 1.0
N A:GLY154 4.1 26.6 1.0
NZ A:LYS157 4.1 25.0 1.0
O A:HOH933 4.2 28.4 1.0
CA A:SER203 4.3 24.9 1.0
O3B A:ADP801 4.3 23.8 1.0
CB A:SER153 4.3 25.7 1.0
O A:SER204 4.5 24.0 1.0
CB A:SER203 4.6 23.9 1.0
C A:SER203 4.6 25.7 1.0
O A:HOH1035 4.6 22.5 1.0
C A:SER153 4.6 24.7 1.0
O3A A:ADP801 4.6 24.1 1.0
CB A:SER204 4.6 27.9 1.0
CE A:LYS157 4.7 25.2 1.0
CA A:SER204 4.7 23.9 1.0
CA A:ALA458 4.8 25.4 1.0
CA A:GLY459 4.8 22.6 1.0
C A:ALA458 4.9 24.6 1.0
CG A:ASN200 5.0 25.9 1.0

Vanadium binding site 2 out of 2 in 4e7z

Go back to Vanadium Binding Sites List in 4e7z
Vanadium binding site 2 out of 2 in the Myosin VI (Md) Pre-Powerstroke State, P21 Crystal Form


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 2 of Myosin VI (Md) Pre-Powerstroke State, P21 Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
B:V802

b:23.6
occ:1.00
V B:VO4802 0.0 23.6 1.0
O2 B:VO4802 1.9 30.1 1.0
O4 B:VO4802 1.9 24.4 1.0
O3 B:VO4802 1.9 28.7 1.0
O1 B:VO4802 1.9 22.0 1.0
O2B B:ADP801 2.2 24.2 1.0
PB B:ADP801 3.4 26.0 1.0
MG B:MG803 3.6 32.1 1.0
ND2 B:ASN200 3.8 23.7 1.0
N B:SER204 3.9 26.9 1.0
O B:HOH958 3.9 28.1 1.0
OG B:SER153 3.9 29.4 1.0
O1B B:ADP801 3.9 23.8 1.0
CA B:SER153 3.9 27.9 1.0
OG B:SER203 3.9 27.7 1.0
N B:GLY459 4.0 26.3 1.0
N B:GLY154 4.0 24.6 1.0
NZ B:LYS157 4.1 23.8 1.0
O3B B:ADP801 4.1 28.2 1.0
CB B:SER153 4.3 24.7 1.0
CA B:SER203 4.3 24.9 1.0
O B:SER204 4.4 29.7 1.0
O B:HOH971 4.4 24.9 1.0
O B:HOH983 4.4 28.3 1.0
CB B:SER204 4.5 25.4 1.0
C B:SER153 4.5 28.9 1.0
C B:SER203 4.6 29.5 1.0
CB B:SER203 4.6 22.8 1.0
O3A B:ADP801 4.6 24.1 1.0
CA B:SER204 4.7 25.7 1.0
CA B:ALA458 4.7 25.9 1.0
CE B:LYS157 4.8 23.1 1.0
CA B:GLY459 4.8 24.2 1.0
C B:ALA458 4.9 27.3 1.0
CG B:ASN200 4.9 24.6 1.0
OG B:SER204 4.9 24.3 1.0
CB B:ASN200 5.0 21.0 1.0
N B:SER153 5.0 25.9 1.0

Reference:

J.Menetrey, T.Isabet, V.Ropars, M.Mukherjea, O.Pylypenko, X.Liu, J.Perez, P.Vachette, H.L.Sweeney, A.M.Houdusse. Processive Steps in the Reverse Direction Require Uncoupling of the Lead Head Lever Arm of Myosin VI. Mol.Cell V. 48 75 2012.
ISSN: ISSN 1097-2765
PubMed: 22940248
DOI: 10.1016/J.MOLCEL.2012.07.034
Page generated: Wed Dec 16 02:31:10 2020

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