Atomistry » Vanadium » PDB 3omx-4zg4 » 4e7z
Atomistry »
  Vanadium »
    PDB 3omx-4zg4 »
      4e7z »

Vanadium in PDB 4e7z: Myosin VI (Md) Pre-Powerstroke State, P21 Crystal Form

Protein crystallography data

The structure of Myosin VI (Md) Pre-Powerstroke State, P21 Crystal Form, PDB code: 4e7z was solved by T.Isabet, H.L.Sweeney, A.Houdusse, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.65 / 2.30
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 98.148, 93.319, 101.875, 90.00, 90.60, 90.00
R / Rfree (%) 17.6 / 23.1

Other elements in 4e7z:

The structure of Myosin VI (Md) Pre-Powerstroke State, P21 Crystal Form also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Vanadium Binding Sites:

The binding sites of Vanadium atom in the Myosin VI (Md) Pre-Powerstroke State, P21 Crystal Form (pdb code 4e7z). This binding sites where shown within 5.0 Angstroms radius around Vanadium atom.
In total 2 binding sites of Vanadium where determined in the Myosin VI (Md) Pre-Powerstroke State, P21 Crystal Form, PDB code: 4e7z:
Jump to Vanadium binding site number: 1; 2;

Vanadium binding site 1 out of 2 in 4e7z

Go back to Vanadium Binding Sites List in 4e7z
Vanadium binding site 1 out of 2 in the Myosin VI (Md) Pre-Powerstroke State, P21 Crystal Form


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 1 of Myosin VI (Md) Pre-Powerstroke State, P21 Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:V802

b:22.7
occ:1.00
V A:VO4802 0.0 22.7 1.0
O2 A:VO4802 1.8 26.5 1.0
O4 A:VO4802 1.9 25.5 1.0
O3 A:VO4802 1.9 23.8 1.0
O1 A:VO4802 1.9 27.5 1.0
O2B A:ADP801 2.3 26.1 1.0
PB A:ADP801 3.4 24.5 1.0
O1B A:ADP801 3.6 20.7 1.0
OG A:SER203 3.9 29.3 1.0
O A:HOH979 3.9 26.0 1.0
N A:SER204 3.9 26.1 1.0
MG A:MG803 3.9 32.4 1.0
ND2 A:ASN200 3.9 21.9 1.0
OG A:SER153 3.9 25.8 1.0
CA A:SER153 4.0 24.5 1.0
N A:GLY459 4.1 22.8 1.0
N A:GLY154 4.1 26.6 1.0
NZ A:LYS157 4.1 25.0 1.0
O A:HOH933 4.2 28.4 1.0
CA A:SER203 4.3 24.9 1.0
O3B A:ADP801 4.3 23.8 1.0
CB A:SER153 4.3 25.7 1.0
O A:SER204 4.5 24.0 1.0
CB A:SER203 4.6 23.9 1.0
C A:SER203 4.6 25.7 1.0
O A:HOH1035 4.6 22.5 1.0
C A:SER153 4.6 24.7 1.0
O3A A:ADP801 4.6 24.1 1.0
CB A:SER204 4.6 27.9 1.0
CE A:LYS157 4.7 25.2 1.0
CA A:SER204 4.7 23.9 1.0
CA A:ALA458 4.8 25.4 1.0
CA A:GLY459 4.8 22.6 1.0
C A:ALA458 4.9 24.6 1.0
CG A:ASN200 5.0 25.9 1.0

Vanadium binding site 2 out of 2 in 4e7z

Go back to Vanadium Binding Sites List in 4e7z
Vanadium binding site 2 out of 2 in the Myosin VI (Md) Pre-Powerstroke State, P21 Crystal Form


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 2 of Myosin VI (Md) Pre-Powerstroke State, P21 Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
B:V802

b:23.6
occ:1.00
V B:VO4802 0.0 23.6 1.0
O2 B:VO4802 1.9 30.1 1.0
O4 B:VO4802 1.9 24.4 1.0
O3 B:VO4802 1.9 28.7 1.0
O1 B:VO4802 1.9 22.0 1.0
O2B B:ADP801 2.2 24.2 1.0
PB B:ADP801 3.4 26.0 1.0
MG B:MG803 3.6 32.1 1.0
ND2 B:ASN200 3.8 23.7 1.0
N B:SER204 3.9 26.9 1.0
O B:HOH958 3.9 28.1 1.0
OG B:SER153 3.9 29.4 1.0
O1B B:ADP801 3.9 23.8 1.0
CA B:SER153 3.9 27.9 1.0
OG B:SER203 3.9 27.7 1.0
N B:GLY459 4.0 26.3 1.0
N B:GLY154 4.0 24.6 1.0
NZ B:LYS157 4.1 23.8 1.0
O3B B:ADP801 4.1 28.2 1.0
CB B:SER153 4.3 24.7 1.0
CA B:SER203 4.3 24.9 1.0
O B:SER204 4.4 29.7 1.0
O B:HOH971 4.4 24.9 1.0
O B:HOH983 4.4 28.3 1.0
CB B:SER204 4.5 25.4 1.0
C B:SER153 4.5 28.9 1.0
C B:SER203 4.6 29.5 1.0
CB B:SER203 4.6 22.8 1.0
O3A B:ADP801 4.6 24.1 1.0
CA B:SER204 4.7 25.7 1.0
CA B:ALA458 4.7 25.9 1.0
CE B:LYS157 4.8 23.1 1.0
CA B:GLY459 4.8 24.2 1.0
C B:ALA458 4.9 27.3 1.0
CG B:ASN200 4.9 24.6 1.0
OG B:SER204 4.9 24.3 1.0
CB B:ASN200 5.0 21.0 1.0
N B:SER153 5.0 25.9 1.0

Reference:

J.Menetrey, T.Isabet, V.Ropars, M.Mukherjea, O.Pylypenko, X.Liu, J.Perez, P.Vachette, H.L.Sweeney, A.M.Houdusse. Processive Steps in the Reverse Direction Require Uncoupling of the Lead Head Lever Arm of Myosin VI. Mol.Cell V. 48 75 2012.
ISSN: ISSN 1097-2765
PubMed: 22940248
DOI: 10.1016/J.MOLCEL.2012.07.034
Page generated: Thu Oct 29 07:05:29 2020

Last articles

Xe in 6AYK
Xe in 6QII
Xe in 6ASM
Xe in 5NSW
Xe in 6FY9
Xe in 5O1K
Xe in 5O27
Xe in 5M69
Xe in 5KPU
Xe in 5I63
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy