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Vanadium in PDB 4e7s: Myosin VI D23R I24R R569E (Md) Pre-Powerstroke State

Protein crystallography data

The structure of Myosin VI D23R I24R R569E (Md) Pre-Powerstroke State, PDB code: 4e7s was solved by T.Isabet, H.L.Sweeney, A.Houdusse, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.77 / 2.25
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 81.947, 135.140, 196.540, 90.00, 90.00, 90.00
R / Rfree (%) 17.9 / 21.6

Other elements in 4e7s:

The structure of Myosin VI D23R I24R R569E (Md) Pre-Powerstroke State also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Vanadium Binding Sites:

The binding sites of Vanadium atom in the Myosin VI D23R I24R R569E (Md) Pre-Powerstroke State (pdb code 4e7s). This binding sites where shown within 5.0 Angstroms radius around Vanadium atom.
In total 2 binding sites of Vanadium where determined in the Myosin VI D23R I24R R569E (Md) Pre-Powerstroke State, PDB code: 4e7s:
Jump to Vanadium binding site number: 1; 2;

Vanadium binding site 1 out of 2 in 4e7s

Go back to Vanadium Binding Sites List in 4e7s
Vanadium binding site 1 out of 2 in the Myosin VI D23R I24R R569E (Md) Pre-Powerstroke State


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 1 of Myosin VI D23R I24R R569E (Md) Pre-Powerstroke State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:V802

b:35.9
occ:1.00
V A:VO4802 0.0 35.9 1.0
O2 A:VO4802 1.9 40.0 1.0
O4 A:VO4802 1.9 35.8 1.0
O3 A:VO4802 1.9 37.4 1.0
O1 A:VO4802 1.9 36.6 1.0
O2B A:ADP801 2.0 35.5 1.0
PB A:ADP801 3.3 34.1 1.0
MG A:MG803 3.6 37.0 1.0
O1B A:ADP801 3.7 30.3 1.0
OG A:SER203 3.9 40.0 1.0
N A:SER204 3.9 37.2 1.0
ND2 A:ASN200 4.0 34.8 1.0
OG A:SER153 4.0 37.6 1.0
CA A:SER153 4.0 36.0 1.0
N A:GLY459 4.0 39.0 1.0
NZ A:LYS157 4.0 30.9 1.0
O A:HOH903 4.0 36.2 1.0
N A:GLY154 4.1 34.0 1.0
O A:HOH901 4.2 37.7 1.0
O3B A:ADP801 4.2 32.9 1.0
CB A:SER153 4.3 38.3 1.0
CA A:SER203 4.3 35.4 1.0
O A:HOH902 4.4 35.5 1.0
O A:SER204 4.4 39.2 1.0
O3A A:ADP801 4.5 30.5 1.0
CE A:LYS157 4.5 31.1 1.0
C A:SER153 4.6 37.4 1.0
C A:SER203 4.6 36.1 1.0
CB A:SER204 4.6 37.1 1.0
CB A:SER203 4.6 33.2 1.0
OG A:SER204 4.8 35.1 1.0
CA A:SER204 4.8 35.8 1.0
CA A:GLY459 4.8 36.3 1.0
CA A:ALA458 4.8 39.9 1.0
C A:ALA458 4.9 38.4 1.0

Vanadium binding site 2 out of 2 in 4e7s

Go back to Vanadium Binding Sites List in 4e7s
Vanadium binding site 2 out of 2 in the Myosin VI D23R I24R R569E (Md) Pre-Powerstroke State


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 2 of Myosin VI D23R I24R R569E (Md) Pre-Powerstroke State within 5.0Å range:
probe atom residue distance (Å) B Occ
B:V802

b:35.4
occ:1.00
V B:VO4802 0.0 35.4 1.0
O4 B:VO4802 1.9 35.5 1.0
O3 B:VO4802 1.9 36.1 1.0
O2 B:VO4802 1.9 38.1 1.0
O1 B:VO4802 1.9 36.1 1.0
O2B B:ADP801 2.1 33.7 1.0
PB B:ADP801 3.3 35.4 1.0
MG B:MG803 3.7 35.9 1.0
O1B B:ADP801 3.7 30.7 1.0
OG B:SER203 3.9 41.5 1.0
O B:HOH903 3.9 39.6 1.0
N B:GLY154 4.0 37.0 1.0
ND2 B:ASN200 4.0 30.6 1.0
N B:SER204 4.0 41.5 1.0
CA B:SER153 4.0 39.1 1.0
OG B:SER153 4.0 38.2 1.0
NZ B:LYS157 4.1 31.7 1.0
N B:GLY459 4.1 41.2 1.0
O B:HOH901 4.1 38.4 1.0
O3B B:ADP801 4.2 36.2 1.0
CB B:SER153 4.3 39.8 1.0
CA B:SER203 4.4 36.5 1.0
O B:HOH902 4.4 34.5 1.0
O B:SER204 4.5 37.3 1.0
O3A B:ADP801 4.5 35.3 1.0
C B:SER153 4.5 40.8 1.0
CB B:SER203 4.6 35.9 1.0
CB B:SER204 4.6 39.8 1.0
C B:SER203 4.7 40.6 1.0
OG B:SER204 4.7 37.5 1.0
CE B:LYS157 4.7 36.4 1.0
CA B:ALA458 4.8 40.2 1.0
CA B:SER204 4.8 40.8 1.0
CA B:GLY459 4.9 36.5 1.0
C B:ALA458 5.0 40.1 1.0

Reference:

J.Menetrey, T.Isabet, V.Ropars, M.Mukherjea, O.Pylypenko, X.Liu, J.Perez, P.Vachette, H.L.Sweeney, A.M.Houdusse. Processive Steps in the Reverse Direction Require Uncoupling of the Lead Head Lever Arm of Myosin VI. Mol.Cell V. 48 75 2012.
ISSN: ISSN 1097-2765
PubMed: 22940248
DOI: 10.1016/J.MOLCEL.2012.07.034
Page generated: Thu Oct 29 07:05:28 2020

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