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Vanadium in PDB 4byf: Crystal Structure of Human Myosin 1C in Complex with Calmodulin in the Pre-Power Stroke State

Enzymatic activity of Crystal Structure of Human Myosin 1C in Complex with Calmodulin in the Pre-Power Stroke State

All present enzymatic activity of Crystal Structure of Human Myosin 1C in Complex with Calmodulin in the Pre-Power Stroke State:
3.6.4.1;

Protein crystallography data

The structure of Crystal Structure of Human Myosin 1C in Complex with Calmodulin in the Pre-Power Stroke State, PDB code: 4byf was solved by S.Munnich, M.H.Taft, S.Pathan-Chhatbar, D.J.Manstein, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.94 / 2.74
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 59.580, 158.450, 114.340, 90.00, 91.56, 90.00
R / Rfree (%) 18.3 / 23.67

Other elements in 4byf:

The structure of Crystal Structure of Human Myosin 1C in Complex with Calmodulin in the Pre-Power Stroke State also contains other interesting chemical elements:

Magnesium (Mg) 3 atoms

Vanadium Binding Sites:

The binding sites of Vanadium atom in the Crystal Structure of Human Myosin 1C in Complex with Calmodulin in the Pre-Power Stroke State (pdb code 4byf). This binding sites where shown within 5.0 Angstroms radius around Vanadium atom.
In total 2 binding sites of Vanadium where determined in the Crystal Structure of Human Myosin 1C in Complex with Calmodulin in the Pre-Power Stroke State, PDB code: 4byf:
Jump to Vanadium binding site number: 1; 2;

Vanadium binding site 1 out of 2 in 4byf

Go back to Vanadium Binding Sites List in 4byf
Vanadium binding site 1 out of 2 in the Crystal Structure of Human Myosin 1C in Complex with Calmodulin in the Pre-Power Stroke State


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 1 of Crystal Structure of Human Myosin 1C in Complex with Calmodulin in the Pre-Power Stroke State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:V1001

b:16.3
occ:1.00
VG A:AOV1001 0.0 16.3 1.0
O3B A:AOV1001 2.0 38.1 1.0
O4G A:AOV1001 2.1 35.0 1.0
O1G A:AOV1001 2.1 24.9 1.0
O2G A:AOV1001 2.1 12.3 1.0
O3G A:AOV1001 2.1 48.9 1.0
H4G1 A:AOV1001 2.8 42.0 1.0
H2G1 A:AOV1001 2.8 14.8 1.0
H3G1 A:AOV1001 2.8 58.6 1.0
PB A:AOV1001 3.2 22.2 1.0
O1B A:AOV1001 3.5 32.7 1.0
O A:HOH2010 3.7 11.0 1.0
MG A:MG1000 3.8 17.9 1.0
O2B A:AOV1001 4.0 72.2 1.0
OG A:SER160 4.0 26.5 1.0
ND2 A:ASN157 4.1 27.8 1.0
N A:SER161 4.1 40.7 1.0
CA A:SER107 4.1 31.8 1.0
O A:HOH2056 4.1 47.2 1.0
N A:GLY108 4.1 28.2 1.0
OG A:SER107 4.2 42.4 1.0
N A:GLY389 4.3 32.2 1.0
NZ A:LYS111 4.4 38.7 1.0
O3A A:AOV1001 4.4 27.6 1.0
CB A:SER107 4.5 37.0 1.0
CA A:SER160 4.6 38.7 1.0
CA A:TYR388 4.6 34.9 1.0
C A:SER107 4.7 34.0 1.0
O A:SER161 4.7 23.1 1.0
CB A:SER161 4.7 30.7 1.0
CB A:SER160 4.8 27.1 1.0
C A:SER160 4.8 40.1 1.0
CA A:SER161 4.9 33.1 1.0
CE A:LYS111 4.9 22.7 1.0
O2A A:AOV1001 4.9 12.9 1.0
OG A:SER161 5.0 22.0 1.0
CB A:TYR388 5.0 35.3 1.0

Vanadium binding site 2 out of 2 in 4byf

Go back to Vanadium Binding Sites List in 4byf
Vanadium binding site 2 out of 2 in the Crystal Structure of Human Myosin 1C in Complex with Calmodulin in the Pre-Power Stroke State


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 2 of Crystal Structure of Human Myosin 1C in Complex with Calmodulin in the Pre-Power Stroke State within 5.0Å range:
probe atom residue distance (Å) B Occ
C:V1001

b:35.6
occ:1.00
VG C:AOV1001 0.0 35.6 1.0
O3B C:AOV1001 2.0 46.0 1.0
O2G C:AOV1001 2.1 40.6 1.0
O1G C:AOV1001 2.1 63.7 1.0
O4G C:AOV1001 2.1 56.6 1.0
O3G C:AOV1001 2.1 48.6 1.0
H2G1 C:AOV1001 2.8 48.7 1.0
H4G1 C:AOV1001 2.8 68.0 1.0
H3G1 C:AOV1001 2.8 58.4 1.0
PB C:AOV1001 3.2 27.0 1.0
MG C:MG1000 3.3 23.6 1.0
O1B C:AOV1001 3.5 21.7 1.0
O2B C:AOV1001 3.7 44.8 1.0
O C:HOH2055 3.8 47.0 1.0
O C:HOH2021 3.9 23.7 1.0
CA C:SER107 4.0 48.1 1.0
ND2 C:ASN157 4.0 40.6 1.0
OG C:SER107 4.0 64.7 1.0
N C:GLY108 4.0 45.8 1.0
OG C:SER160 4.1 39.5 1.0
N C:SER161 4.1 45.5 1.0
NZ C:LYS111 4.1 34.8 1.0
O C:HOH2019 4.2 16.4 1.0
N C:GLY389 4.3 50.6 1.0
CB C:SER107 4.4 58.8 1.0
O3A C:AOV1001 4.4 12.4 1.0
C C:SER107 4.5 46.5 1.0
CA C:SER160 4.6 44.0 1.0
O C:SER161 4.7 26.3 1.0
CB C:SER161 4.7 38.5 1.0
CA C:TYR388 4.7 49.9 1.0
CE C:LYS111 4.8 32.2 1.0
CB C:SER160 4.8 38.7 1.0
C C:SER160 4.9 46.3 1.0
OG C:SER161 4.9 33.6 1.0
CA C:SER161 4.9 41.5 1.0
O C:ILE387 4.9 43.3 1.0
O2A C:AOV1001 4.9 55.5 1.0
O C:GLU106 5.0 46.9 1.0
N C:SER107 5.0 39.6 1.0

Reference:

S.Munnich, M.H.Taft, D.J.Manstein. Crystal Structure of Human Myosin 1C-the Motor in GLUT4 Exocytosis: Implications For Ca(2+) Regulation and 14-3-3 Binding. J.Mol.Biol. V. 426 2070 2014.
ISSN: ISSN 0022-2836
PubMed: 24636949
DOI: 10.1016/J.JMB.2014.03.004
Page generated: Thu Oct 29 07:05:24 2020

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