Atomistry » Vanadium » PDB 3omx-4zg4 » 3zx5
Atomistry »
  Vanadium »
    PDB 3omx-4zg4 »
      3zx5 »

Vanadium in PDB 3zx5: The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, Covalently Bound to Vanadate and in Complex with Alpha-Mannosylglycerate and Magnesium

Enzymatic activity of The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, Covalently Bound to Vanadate and in Complex with Alpha-Mannosylglycerate and Magnesium

All present enzymatic activity of The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, Covalently Bound to Vanadate and in Complex with Alpha-Mannosylglycerate and Magnesium:
3.1.3.70;

Protein crystallography data

The structure of The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, Covalently Bound to Vanadate and in Complex with Alpha-Mannosylglycerate and Magnesium, PDB code: 3zx5 was solved by S.Goncalves, A.M.Esteves, H.Santos, N.Borges, P.M.Matias, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.772 / 1.81
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 39.948, 71.263, 91.217, 90.00, 95.52, 90.00
R / Rfree (%) 16.8 / 21.26

Other elements in 3zx5:

The structure of The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, Covalently Bound to Vanadate and in Complex with Alpha-Mannosylglycerate and Magnesium also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Vanadium Binding Sites:

The binding sites of Vanadium atom in the The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, Covalently Bound to Vanadate and in Complex with Alpha-Mannosylglycerate and Magnesium (pdb code 3zx5). This binding sites where shown within 5.0 Angstroms radius around Vanadium atom.
In total 2 binding sites of Vanadium where determined in the The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, Covalently Bound to Vanadate and in Complex with Alpha-Mannosylglycerate and Magnesium, PDB code: 3zx5:
Jump to Vanadium binding site number: 1; 2;

Vanadium binding site 1 out of 2 in 3zx5

Go back to Vanadium Binding Sites List in 3zx5
Vanadium binding site 1 out of 2 in the The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, Covalently Bound to Vanadate and in Complex with Alpha-Mannosylglycerate and Magnesium


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 1 of The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, Covalently Bound to Vanadate and in Complex with Alpha-Mannosylglycerate and Magnesium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:V261

b:28.6
occ:1.00
V A:VN4261 0.0 28.6 1.0
O2 A:VN4261 1.9 27.5 1.0
O3 A:VN4261 1.9 27.1 1.0
O1 A:VN4261 1.9 26.8 1.0
OD1 A:ASP6 2.0 26.5 1.0
CG A:ASP6 3.1 32.2 1.0
MG A:MG260 3.5 30.7 1.0
OD2 A:ASP6 3.6 34.9 1.0
OG1 A:THR39 3.6 25.1 1.0
C23 A:2M8262 3.6 32.9 1.0
N A:ASP8 3.8 28.3 1.0
N A:ALA40 3.8 24.6 1.0
O13 A:2M8262 3.8 34.1 1.0
NZ A:LYS177 3.8 26.8 1.0
O A:HOH2005 3.9 27.9 1.0
N A:LEU7 4.0 31.1 1.0
CB A:ASP8 4.0 46.0 1.0
CA A:THR39 4.2 20.3 1.0
OD2 A:ASP8 4.3 53.6 1.0
O A:ASP8 4.3 38.0 1.0
ND2 A:ASN205 4.3 24.8 1.0
CB A:THR39 4.4 24.7 1.0
CB A:ASP6 4.4 26.7 1.0
CA A:ASP8 4.4 36.1 1.0
CB A:ALA40 4.5 23.7 1.0
CG A:ASP8 4.5 48.0 1.0
C A:THR39 4.6 19.2 1.0
C A:LEU7 4.6 35.2 1.0
CA A:LEU7 4.6 31.5 1.0
CA A:ALA40 4.8 23.1 1.0
CA A:ASP6 4.8 30.8 1.0
C A:ASP6 4.8 33.7 1.0
CB A:LEU7 4.8 30.8 1.0
C A:ASP8 4.9 36.8 1.0
O A:HOH2006 4.9 28.2 1.0
O A:VAL38 4.9 23.0 1.0
CE A:LYS177 5.0 21.3 1.0

Vanadium binding site 2 out of 2 in 3zx5

Go back to Vanadium Binding Sites List in 3zx5
Vanadium binding site 2 out of 2 in the The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, Covalently Bound to Vanadate and in Complex with Alpha-Mannosylglycerate and Magnesium


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 2 of The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, Covalently Bound to Vanadate and in Complex with Alpha-Mannosylglycerate and Magnesium within 5.0Å range:
probe atom residue distance (Å) B Occ
B:V261

b:23.5
occ:1.00
V B:VN4261 0.0 23.5 1.0
O2 B:VN4261 1.9 18.6 1.0
O1 B:VN4261 1.9 21.3 1.0
O3 B:VN4261 1.9 21.4 1.0
OD1 B:ASP6 2.0 20.0 1.0
O13 B:2M8262 2.7 29.6 1.0
CG B:ASP6 3.0 19.1 1.0
OD2 B:ASP6 3.4 20.7 1.0
MG B:MG260 3.5 23.2 1.0
C23 B:2M8262 3.7 24.4 1.0
OG1 B:THR39 3.7 20.1 1.0
N B:ASP8 3.8 22.0 1.0
NZ B:LYS177 3.9 18.5 1.0
O B:HOH2006 3.9 20.2 1.0
N B:ALA40 3.9 17.6 1.0
N B:LEU7 4.0 20.4 1.0
CB B:ASP8 4.1 21.2 1.0
O B:ASP8 4.2 22.3 1.0
ND2 B:ASN205 4.3 18.7 1.0
CA B:THR39 4.3 14.8 1.0
CB B:ASP6 4.4 18.8 1.0
CA B:ASP8 4.4 21.5 1.0
CB B:THR39 4.5 19.4 1.0
OD2 B:ASP8 4.5 42.1 1.0
C B:LEU7 4.5 19.1 1.0
CB B:ALA40 4.5 17.6 1.0
C B:THR39 4.6 17.0 1.0
CA B:LEU7 4.6 19.5 1.0
CG B:ASP8 4.7 35.8 1.0
O B:HOH2010 4.7 22.1 1.0
CA B:ASP6 4.8 18.4 1.0
C B:ASP8 4.8 19.8 1.0
C B:ASP6 4.8 25.8 1.0
CA B:ALA40 4.9 17.7 1.0
CB B:LEU7 4.9 23.8 1.0
O B:VAL38 5.0 21.0 1.0

Reference:

S.Goncalves, A.M.Esteves, H.Santos, N.Borges, P.M.Matias. The Three-Dimensional Structure of Mannosyl-3- Phosphoglycerate Phosphatase From Thermus Thermophilus HB27: A New Member of the Haloalkanoic Acid Dehalogenase Superfamily. Biochemistry V. 50 9551 2011.
ISSN: ISSN 0006-2960
PubMed: 21961705
DOI: 10.1021/BI201171H
Page generated: Wed Dec 16 02:31:03 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy