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Vanadium in PDB 3zwk: The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Metavanadate

Enzymatic activity of The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Metavanadate

All present enzymatic activity of The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Metavanadate:
3.1.3.70;

Protein crystallography data

The structure of The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Metavanadate, PDB code: 3zwk was solved by S.Goncalves, A.M.Esteves, H.Santos, N.Borges, P.M.Matias, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.276 / 2.10
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 39.968, 71.364, 92.974, 90.00, 95.46, 90.00
R / Rfree (%) 15.55 / 21.08

Other elements in 3zwk:

The structure of The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Metavanadate also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Vanadium Binding Sites:

The binding sites of Vanadium atom in the The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Metavanadate (pdb code 3zwk). This binding sites where shown within 5.0 Angstroms radius around Vanadium atom.
In total only one binding site of Vanadium was determined in the The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Metavanadate, PDB code: 3zwk:

Vanadium binding site 1 out of 1 in 3zwk

Go back to Vanadium Binding Sites List in 3zwk
Vanadium binding site 1 out of 1 in the The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Metavanadate


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 1 of The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Metavanadate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:V261

b:55.0
occ:0.59
V B:VN3261 0.0 55.0 0.6
O2 B:VN3261 1.9 28.3 0.6
O1 B:VN3261 1.9 22.4 0.6
O3 B:VN3261 1.9 35.1 0.6
OD1 B:ASP6 2.5 50.6 1.0
O B:HOH2006 2.9 48.3 1.0
MG B:MG260 3.1 33.2 1.0
O B:HOH2133 3.3 50.2 1.0
CG B:ASP6 3.4 53.8 1.0
OD2 B:ASP6 3.6 63.8 1.0
O B:HOH2003 3.7 37.0 1.0
OG1 B:THR39 3.8 29.9 1.0
N B:ALA40 3.8 23.8 1.0
N B:ASP8 3.8 35.8 1.0
CB B:ASP8 4.1 57.8 1.0
N B:LEU7 4.2 35.2 1.0
O B:ASP8 4.3 51.2 1.0
CA B:THR39 4.3 25.2 1.0
NZ B:LYS177 4.4 36.4 1.0
CB B:ALA40 4.4 25.0 1.0
CA B:ASP8 4.5 45.6 1.0
CB B:THR39 4.5 26.3 1.0
C B:THR39 4.6 25.9 1.0
CA B:ALA40 4.7 23.4 1.0
C B:LEU7 4.7 40.0 1.0
O B:HOH2005 4.7 57.1 1.0
OD2 B:ASP8 4.7 90.2 1.0
CG B:ASP8 4.8 78.0 1.0
O B:HOH2170 4.8 54.6 0.8
CB B:ASP6 4.8 39.7 1.0
CA B:LEU7 4.8 41.7 1.0
ND2 B:ASN205 4.8 33.2 1.0
CB B:LEU7 4.9 38.0 1.0
C B:ASP8 4.9 45.6 1.0

Reference:

S.Goncalves, A.M.Esteves, H.Santos, N.Borges, P.M.Matias. The Three-Dimensional Structure of Mannosyl-3- Phosphoglycerate Phosphatase From Thermus Thermophilus HB27: A New Member of the Haloalkanoic Acid Dehalogenase Superfamily. Biochemistry V. 50 9551 2011.
ISSN: ISSN 0006-2960
PubMed: 21961705
DOI: 10.1021/BI201171H
Page generated: Thu Oct 29 07:05:17 2020

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