Atomistry » Vanadium » PDB 3omx-4zg4 » 3w36
Atomistry »
  Vanadium »
    PDB 3omx-4zg4 »
      3w36 »

Vanadium in PDB 3w36: Crystal Structure of Holo-Type Bacterial Vanadium-Dependent Chloroperoxidase

Enzymatic activity of Crystal Structure of Holo-Type Bacterial Vanadium-Dependent Chloroperoxidase

All present enzymatic activity of Crystal Structure of Holo-Type Bacterial Vanadium-Dependent Chloroperoxidase:
1.11.1.10;

Protein crystallography data

The structure of Crystal Structure of Holo-Type Bacterial Vanadium-Dependent Chloroperoxidase, PDB code: 3w36 was solved by D.K.Liscombe, A.Miyanaga, E.Fielding, P.Bernhardt, A.Li, J.M.Winter, M.K.Gilson, J.P.Noel, B.S.Moore, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.41 / 1.97
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 57.530, 135.090, 159.370, 90.00, 90.00, 90.00
R / Rfree (%) 20.5 / 24.3

Vanadium Binding Sites:

The binding sites of Vanadium atom in the Crystal Structure of Holo-Type Bacterial Vanadium-Dependent Chloroperoxidase (pdb code 3w36). This binding sites where shown within 5.0 Angstroms radius around Vanadium atom.
In total 2 binding sites of Vanadium where determined in the Crystal Structure of Holo-Type Bacterial Vanadium-Dependent Chloroperoxidase, PDB code: 3w36:
Jump to Vanadium binding site number: 1; 2;

Vanadium binding site 1 out of 2 in 3w36

Go back to Vanadium Binding Sites List in 3w36
Vanadium binding site 1 out of 2 in the Crystal Structure of Holo-Type Bacterial Vanadium-Dependent Chloroperoxidase


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 1 of Crystal Structure of Holo-Type Bacterial Vanadium-Dependent Chloroperoxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:V600

b:27.0
occ:1.00
V A:VO4600 0.0 27.0 1.0
O2 A:VO4600 1.8 26.6 1.0
O3 A:VO4600 1.9 27.8 1.0
O1 A:VO4600 1.9 27.2 1.0
O4 A:VO4600 2.0 27.4 1.0
NE2 A:HIS494 2.2 24.7 1.0
CE1 A:HIS494 3.2 25.9 1.0
CD2 A:HIS494 3.2 25.3 1.0
O A:HOH812 3.6 48.0 1.0
N A:GLY426 3.7 33.5 1.0
NH2 A:ARG488 3.8 22.9 1.0
OG A:SER425 3.9 35.6 1.0
OG A:SER427 4.0 35.3 1.0
CE1 A:HIS420 4.1 23.6 1.0
N A:SER427 4.1 29.6 1.0
NH2 A:ARG379 4.1 26.1 1.0
CA A:SER425 4.2 34.8 1.0
NE A:ARG488 4.2 23.1 1.0
NH1 A:ARG379 4.2 24.7 1.0
NZ A:LYS372 4.3 28.4 1.0
ND1 A:HIS494 4.3 26.0 1.0
CG A:HIS494 4.4 26.2 1.0
C A:SER425 4.4 35.0 1.0
CB A:SER425 4.4 35.3 1.0
CZ A:ARG488 4.5 23.4 1.0
CA A:GLY426 4.5 31.3 1.0
O A:HOH763 4.6 31.3 1.0
CZ A:ARG379 4.6 25.3 1.0
CB A:SER427 4.7 30.3 1.0
ND1 A:HIS420 4.8 24.6 1.0
C A:GLY426 4.8 29.8 1.0

Vanadium binding site 2 out of 2 in 3w36

Go back to Vanadium Binding Sites List in 3w36
Vanadium binding site 2 out of 2 in the Crystal Structure of Holo-Type Bacterial Vanadium-Dependent Chloroperoxidase


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 2 of Crystal Structure of Holo-Type Bacterial Vanadium-Dependent Chloroperoxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:V600

b:17.8
occ:1.00
V B:VO4600 0.0 17.8 1.0
O2 B:VO4600 1.8 18.2 1.0
O1 B:VO4600 1.9 18.9 1.0
O3 B:VO4600 1.9 17.4 1.0
O4 B:VO4600 2.1 18.9 1.0
NE2 B:HIS494 2.1 17.0 1.0
CE1 B:HIS494 3.1 17.3 1.0
CD2 B:HIS494 3.2 17.1 1.0
N B:GLY426 3.7 18.5 1.0
NH2 B:ARG488 3.9 20.6 1.0
OG B:SER425 4.0 19.4 1.0
CE1 B:HIS420 4.1 17.8 1.0
NH2 B:ARG379 4.1 15.6 1.0
NH1 B:ARG379 4.1 15.5 1.0
N B:SER427 4.2 18.3 1.0
ND1 B:HIS494 4.2 17.6 1.0
CA B:SER425 4.2 18.8 1.0
OG B:SER427 4.2 19.5 1.0
CG B:HIS494 4.3 17.4 1.0
NE B:ARG488 4.3 19.1 1.0
NZ B:LYS372 4.4 16.8 1.0
C B:SER425 4.4 18.9 1.0
CB B:SER425 4.4 19.2 1.0
O B:HOH808 4.4 29.4 1.0
CA B:GLY426 4.6 18.3 1.0
CZ B:ARG379 4.6 15.7 1.0
CZ B:ARG488 4.6 19.7 1.0
CB B:SER427 4.7 18.2 1.0
ND1 B:HIS420 4.8 18.1 1.0
C B:GLY426 4.9 18.3 1.0

Reference:

D.K.Liscombe, A.Miyanaga, E.Fielding, P.Bernhardt, A.Li, J.M.Winter, M.K.Gilson, J.P.Noel, B.S.Moore. Structure-Function Analysis of A Bacterial Vanadium-Dependent Chloroperoxidase To Be Published.
Page generated: Thu Oct 29 07:05:17 2020

Last articles

Xe in 6AYK
Xe in 6QII
Xe in 6ASM
Xe in 5NSW
Xe in 6FY9
Xe in 5O1K
Xe in 5O27
Xe in 5M69
Xe in 5KPU
Xe in 5I63
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy