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Vanadium in PDB 3b5z: Crystal Structure of Msba From Salmonella Typhimurium with Adp Vanadate

Protein crystallography data

The structure of Crystal Structure of Msba From Salmonella Typhimurium with Adp Vanadate, PDB code: 3b5z was solved by A.Ward, C.L.Reyes, J.Yu, C.B.Roth, G.Chang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 4.20
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 267.169, 121.103, 176.744, 90.00, 121.57, 90.00
R / Rfree (%) 33.6 / 36.2

Vanadium Binding Sites:

The binding sites of Vanadium atom in the Crystal Structure of Msba From Salmonella Typhimurium with Adp Vanadate (pdb code 3b5z). This binding sites where shown within 5.0 Angstroms radius around Vanadium atom.
In total 4 binding sites of Vanadium where determined in the Crystal Structure of Msba From Salmonella Typhimurium with Adp Vanadate, PDB code: 3b5z:
Jump to Vanadium binding site number: 1; 2; 3; 4;

Vanadium binding site 1 out of 4 in 3b5z

Go back to Vanadium Binding Sites List in 3b5z
Vanadium binding site 1 out of 4 in the Crystal Structure of Msba From Salmonella Typhimurium with Adp Vanadate


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 1 of Crystal Structure of Msba From Salmonella Typhimurium with Adp Vanadate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:V5002

b:0.3
occ:1.00
V A:VO45002 0.0 0.3 1.0
O1 A:VO45002 1.4 0.3 1.0
PB A:ADP5001 2.4 0.3 1.0
O1B A:ADP5001 3.3 0.3 1.0
O2B A:ADP5001 3.4 0.3 1.0
O3A A:ADP5001 3.7 0.3 1.0
CA A:SER383 4.1 0.5 1.0
CA A:SER378 4.5 0.1 1.0
CA A:LYS382 4.9 0.9 1.0

Vanadium binding site 2 out of 4 in 3b5z

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Vanadium binding site 2 out of 4 in the Crystal Structure of Msba From Salmonella Typhimurium with Adp Vanadate


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 2 of Crystal Structure of Msba From Salmonella Typhimurium with Adp Vanadate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:V602

b:0.3
occ:1.00
V B:VO4602 0.0 0.3 1.0
O1 B:VO4602 1.5 0.3 1.0
PB B:ADP601 2.6 0.3 1.0
O1B B:ADP601 3.4 0.3 1.0
O2B B:ADP601 3.6 0.3 1.0
O3A B:ADP601 3.7 0.3 1.0
CA B:SER383 4.2 0.8 1.0
CA B:SER378 4.4 0.1 1.0
CA B:LYS382 4.9 0.4 1.0

Vanadium binding site 3 out of 4 in 3b5z

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Vanadium binding site 3 out of 4 in the Crystal Structure of Msba From Salmonella Typhimurium with Adp Vanadate


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 3 of Crystal Structure of Msba From Salmonella Typhimurium with Adp Vanadate within 5.0Å range:
probe atom residue distance (Å) B Occ
C:V602

b:0.3
occ:1.00
V C:VO4602 0.0 0.3 1.0
O1 C:VO4602 1.4 0.3 1.0
PB C:ADP601 2.5 0.3 1.0
O1B C:ADP601 3.3 0.3 1.0
O2B C:ADP601 3.5 0.3 1.0
O3A C:ADP601 3.6 0.3 1.0
CA C:SER383 4.0 0.8 1.0
CA C:SER378 4.4 0.8 1.0
CA C:LYS382 4.5 0.9 1.0

Vanadium binding site 4 out of 4 in 3b5z

Go back to Vanadium Binding Sites List in 3b5z
Vanadium binding site 4 out of 4 in the Crystal Structure of Msba From Salmonella Typhimurium with Adp Vanadate


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 4 of Crystal Structure of Msba From Salmonella Typhimurium with Adp Vanadate within 5.0Å range:
probe atom residue distance (Å) B Occ
D:V602

b:0.3
occ:1.00
V D:VO4602 0.0 0.3 1.0
O1 D:VO4602 1.4 0.3 1.0
PB D:ADP601 2.5 0.3 1.0
O1B D:ADP601 3.3 0.3 1.0
O2B D:ADP601 3.4 0.3 1.0
O3A D:ADP601 3.7 0.3 1.0
CA D:SER383 4.1 0.5 1.0
CA D:SER378 4.6 0.8 1.0
CA D:LYS382 4.9 0.9 1.0

Reference:

A.Ward, C.L.Reyes, J.Yu, C.B.Roth, G.Chang. Flexibility in the Abc Transporter Msba: Alternating Access with A Twist. Proc.Natl.Acad.Sci.Usa V. 104 19005 2007.
ISSN: ISSN 0027-8424
PubMed: 18024585
DOI: 10.1073/PNAS.0709388104
Page generated: Wed Dec 16 02:30:48 2020

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