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Vanadium in PDB 2v6e: Protelomerase Telk Complexed with Substrate Dna

Protein crystallography data

The structure of Protelomerase Telk Complexed with Substrate Dna, PDB code: 2v6e was solved by H.Aihara, W.M.Huang, T.Ellenberger, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50 / 3.20
Space group P 41
Cell size a, b, c (Å), α, β, γ (°) 157.973, 157.973, 90.842, 90.00, 90.00, 90.00
R / Rfree (%) 25.54 / 28.6

Vanadium Binding Sites:

The binding sites of Vanadium atom in the Protelomerase Telk Complexed with Substrate Dna (pdb code 2v6e). This binding sites where shown within 5.0 Angstroms radius around Vanadium atom.
In total 2 binding sites of Vanadium where determined in the Protelomerase Telk Complexed with Substrate Dna, PDB code: 2v6e:
Jump to Vanadium binding site number: 1; 2;

Vanadium binding site 1 out of 2 in 2v6e

Go back to Vanadium Binding Sites List in 2v6e
Vanadium binding site 1 out of 2 in the Protelomerase Telk Complexed with Substrate Dna


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 1 of Protelomerase Telk Complexed with Substrate Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:V1536

b:38.2
occ:1.00
V A:VO41536 0.0 38.2 1.0
O1 A:VO41536 1.6 37.8 1.0
O2 A:VO41536 1.6 38.3 1.0
O3' D:DA44 1.8 38.8 1.0
O5' E:DC1 2.0 34.8 1.0
OH A:TYR425 2.0 37.3 1.0
C3' D:DA44 2.8 35.9 1.0
C5' E:DC1 3.0 34.8 1.0
CZ A:TYR425 3.0 37.3 1.0
C4' D:DA44 3.2 33.8 1.0
NH2 A:ARG275 3.3 36.0 1.0
CE1 A:TYR425 3.4 37.2 1.0
NH2 A:ARG383 3.8 34.7 1.0
NE A:ARG275 3.8 32.5 1.0
O4' D:DA44 4.0 34.9 1.0
NZ A:LYS300 4.0 35.6 1.0
CZ A:ARG275 4.0 34.2 1.0
C2' D:DA44 4.0 37.0 1.0
CE2 A:TYR425 4.2 38.0 1.0
C1' D:DA44 4.2 35.5 1.0
NE2 A:HIS416 4.4 32.2 1.0
C4' E:DC1 4.4 35.0 1.0
C5' D:DA44 4.4 33.8 1.0
CZ A:ARG383 4.7 34.0 1.0
CD1 A:TYR425 4.7 37.6 1.0
CD A:LYS300 4.8 34.4 1.0
NE A:ARG383 4.8 33.7 1.0
CE A:LYS300 5.0 35.5 1.0

Vanadium binding site 2 out of 2 in 2v6e

Go back to Vanadium Binding Sites List in 2v6e
Vanadium binding site 2 out of 2 in the Protelomerase Telk Complexed with Substrate Dna


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 2 of Protelomerase Telk Complexed with Substrate Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
B:V1536

b:38.4
occ:1.00
V B:VO41536 0.0 38.4 1.0
O1 B:VO41536 1.6 37.8 1.0
O2 B:VO41536 1.6 36.7 1.0
O3' F:DA44 1.8 38.7 1.0
OH B:TYR425 2.0 37.7 1.0
O5' C:DC1 2.0 33.6 1.0
C3' F:DA44 2.8 35.5 1.0
C5' C:DC1 3.0 35.6 1.0
CZ B:TYR425 3.0 36.8 1.0
C4' F:DA44 3.2 33.9 1.0
CE1 B:TYR425 3.3 36.2 1.0
NH2 B:ARG275 3.4 35.2 1.0
NH2 B:ARG383 3.8 34.8 1.0
NE B:ARG275 3.8 30.3 1.0
O4' F:DA44 3.9 35.2 1.0
C2' F:DA44 4.0 36.7 1.0
NZ B:LYS300 4.0 34.9 1.0
CZ B:ARG275 4.1 33.0 1.0
CE2 B:TYR425 4.2 37.6 1.0
C1' F:DA44 4.2 36.5 1.0
NE2 B:HIS416 4.4 34.9 1.0
C4' C:DC1 4.4 35.8 1.0
C5' F:DA44 4.4 33.4 1.0
CD1 B:TYR425 4.7 37.0 1.0
CZ B:ARG383 4.7 34.3 1.0
NE B:ARG383 4.8 32.8 1.0
CD B:LYS300 4.9 33.5 1.0
CE B:LYS300 5.0 34.0 1.0

Reference:

H.Aihara, W.M.Huang, T.Ellenberger. An Interlocked Dimer of the Protelomerase Telk Distorts Dna Structure For the Formation of Hairpin Telomeres Mol.Cell V. 27 901 2007.
ISSN: ISSN 1097-2765
PubMed: 17889664
DOI: 10.1016/J.MOLCEL.2007.07.026
Page generated: Thu Oct 29 07:04:55 2020

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