Vanadium in the structure of Protelomerase Telk Complexed With Substrate Dna (pdb 2v6e)

The binding sites of Vanadium atom in the structure of Protelomerase Telk Complexed With Substrate Dna (pdb code 2v6e). This binding sites where shown with 5.0 Angstroms radius around Vanadium atom. The 2v6e structure was solved by H.AIHARA, W.M.HUANG, T.ELLENBERGER, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 50.0-3.2 Space group P41 a (A) 157.973 b (A) 157.973 c (A) 90.842 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 25.54 Rfree (%) 28.6 Vanadium Binding Sites: Vanadium binding site 1 out of 2 in 2v6e Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Vanadium in the PDB 2v6e. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Vanadium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Arg275, A: Lys300, A: Arg383, A: His416, A: Tyr425, D: Da44, E: Dc1, A: Vo41536, conact list: Atom Atom Distance (A) V CZ A:Arg275 4.04 V NE A:Arg275 3.78 V NH2 A:Arg275 3.35 V CE A:Lys300 4.96 V CD A:Lys300 4.83 V NZ A:Lys300 4.00 V CZ A:Arg383 4.70 V NE A:Arg383 4.84 V NH2 A:Arg383 3.77 V NE2 A:His416 4.36 V CE2 A:Tyr425 4.18 V CD1 A:Tyr425 4.74 V CZ A:Tyr425 3.01 V CE1 A:Tyr425 3.39 V OH A:Tyr425 2.03 V C3' D:Da44 2.82 V C1' D:Da44 4.23 V O3' D:Da44 1.82 V O4' D:Da44 3.95 V C5' D:Da44 4.40 V C2' D:Da44 4.05 V C4' D:Da44 3.16 V C5' E:Dc1 2.97 V C4' E:Dc1 4.37 V O5' E:Dc1 2.03 V O1 A:Vo41536 1.60 V O2 A:Vo41536 1.60 V V A:Vo41536 0.00 interactive model: Vanadium binding site 2 out of 2 in 2v6e Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Vanadium in the PDB 2v6e. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Vanadium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: Arg275, B: Lys300, B: Arg383, B: His416, B: Tyr425, C: Dc1, F: Da44, B: Vo41536, conact list: Atom Atom Distance (A) V CZ B:Arg275 4.09 V NE B:Arg275 3.81 V NH2 B:Arg275 3.40 V CE B:Lys300 4.99 V CD B:Lys300 4.86 V NZ B:Lys300 4.04 V CZ B:Arg383 4.72 V NE B:Arg383 4.84 V NH2 B:Arg383 3.80 V NE2 B:His416 4.36 V CE2 B:Tyr425 4.18 V CD1 B:Tyr425 4.70 V CZ B:Tyr425 3.00 V CE1 B:Tyr425 3.35 V OH B:Tyr425 2.03 V C5' C:Dc1 2.97 V C4' C:Dc1 4.38 V O5' C:Dc1 2.03 V C3' F:Da44 2.82 V C1' F:Da44 4.20 V O3' F:Da44 1.82 V O4' F:Da44 3.93 V C5' F:Da44 4.42 V C2' F:Da44 4.04 V C4' F:Da44 3.16 V O1 B:Vo41536 1.60 V O2 B:Vo41536 1.60 V V B:Vo41536 0.00 interactive model: