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Vanadium in PDB 2v26: Myosin VI (Md) Pre-Powerstroke State (Mg.Adp.VO4)

Protein crystallography data

The structure of Myosin VI (Md) Pre-Powerstroke State (Mg.Adp.VO4), PDB code: 2v26 was solved by J.Menetrey, P.Llinas, M.Mukherjea, H.L.Sweeney, A.Houdusse, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 68.68 / 1.75
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 93.512, 93.845, 100.976, 90.00, 90.00, 90.00
R / Rfree (%) 20.2 / 22.7

Other elements in 2v26:

The structure of Myosin VI (Md) Pre-Powerstroke State (Mg.Adp.VO4) also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Vanadium Binding Sites:

The binding sites of Vanadium atom in the Myosin VI (Md) Pre-Powerstroke State (Mg.Adp.VO4) (pdb code 2v26). This binding sites where shown within 5.0 Angstroms radius around Vanadium atom.
In total only one binding site of Vanadium was determined in the Myosin VI (Md) Pre-Powerstroke State (Mg.Adp.VO4), PDB code: 2v26:

Vanadium binding site 1 out of 1 in 2v26

Go back to Vanadium Binding Sites List in 2v26
Vanadium binding site 1 out of 1 in the Myosin VI (Md) Pre-Powerstroke State (Mg.Adp.VO4)


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 1 of Myosin VI (Md) Pre-Powerstroke State (Mg.Adp.VO4) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:V1791

b:9.1
occ:1.00
V A:VO41791 0.0 9.1 1.0
O2 A:VO41791 1.9 9.3 1.0
O3 A:VO41791 1.9 10.1 1.0
O4 A:VO41791 1.9 11.1 1.0
O1 A:VO41791 1.9 8.5 1.0
O2B A:ADP1789 2.2 9.2 1.0
PB A:ADP1789 3.4 8.1 1.0
MG A:MG1801 3.5 7.5 1.0
O1B A:ADP1789 3.7 6.9 1.0
ND2 A:ASN200 3.8 9.6 1.0
OG A:SER203 3.8 9.2 1.0
N A:SER204 3.9 9.2 1.0
OG A:SER153 4.0 9.7 1.0
CA A:SER153 4.0 8.9 1.0
O A:HOH2314 4.0 10.1 1.0
O A:HOH2315 4.0 11.5 1.0
N A:GLY154 4.1 8.6 1.0
NZ A:LYS157 4.1 6.8 1.0
N A:GLY459 4.2 9.9 1.0
O3B A:ADP1789 4.3 8.0 1.0
CB A:SER153 4.3 8.6 1.0
CA A:SER203 4.3 9.3 1.0
O A:SER204 4.4 9.5 1.0
O A:HOH2527 4.4 10.1 1.0
O3A A:ADP1789 4.5 8.1 1.0
CB A:SER204 4.6 9.8 1.0
CB A:SER203 4.6 9.3 1.0
C A:SER203 4.6 9.5 1.0
C A:SER153 4.6 8.5 1.0
OG A:SER204 4.6 9.8 1.0
CA A:SER204 4.7 9.4 1.0
CA A:ALA458 4.7 11.3 1.0
CE A:LYS157 4.7 7.0 1.0
CG A:ASN200 4.9 9.3 1.0
CB A:ASN200 5.0 9.7 1.0

Reference:

J.Menetrey, P.Llinas, M.Mukherjea, H.L.Sweeney, A.Houdusse. The Structural Basis For the Large Powerstroke of Myosin VI. Cell(Cambridge,Mass.) V. 131 300 2007.
ISSN: ISSN 0092-8674
PubMed: 17956731
DOI: 10.1016/J.CELL.2007.08.027
Page generated: Thu Oct 29 07:04:54 2020

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