Vanadium in the structure of X-Ray Crystallographic Structures Show Conservation of A Trigonal- Bipyramidal Intermediate in A Phosphoryl-Transfer Superfamily. (pdb 2rbk)

The binding sites of Vanadium atom in the structure of X-Ray Crystallographic Structures Show Conservation of A Trigonal- Bipyramidal Intermediate in A Phosphoryl-Transfer Superfamily. (pdb code 2rbk). This binding sites where shown with 5.0 Angstroms radius around Vanadium atom. The 2rbk structure was solved by Z.LU, D.DUNAWAY-MARIANO, K.N.ALLEN, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 10.0-1.0 Space group P212121 a (A) 49.533 b (A) 56.356 c (A) 94.026 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 12.1 Rfree (%) 14.8 Vanadium Binding Sites: Vanadium binding site 1 out of 1 in 2rbk Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Vanadium in the PDB 2rbk. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Vanadium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Asp8, A: Ile9, A: Asp10, A: Ala42, A: Thr43, A: Gly44, A: Trp174, A: Lys188, A: Asn214, A: Mg501, A: Vn4601, A: Hoh603, A: Hoh605, A: Hoh686, conact list: Atom Atom Distance (A) V CB A:Asp8 4.35 V OD2 A:Asp8 2.02 V C A:Asp8 4.76 V OD1 A:Asp8 3.51 V CG A:Asp8 3.09 V CA A:Asp8 4.70 V N A:Ile9 3.89 V CB A:Ile9 4.76 V C A:Ile9 4.52 V CA A:Ile9 4.59 V O A:Asp10 4.42 V N A:Asp10 3.68 V CB A:Asp10 4.20 V OD2 A:Asp10 3.93 V C A:Asp10 4.92 V CG A:Asp10 4.54 V CA A:Asp10 4.46 V O A:Ala42 4.79 V CB A:Thr43 4.40 V OG1 A:Thr43 3.73 V C A:Thr43 4.76 V CA A:Thr43 4.26 V N A:Gly44 4.08 V CB A:Trp174 4.22 V CD1 A:Trp174 4.76 V CD2 A:Trp174 4.38 V CE3 A:Trp174 4.61 V CG A:Trp174 4.21 V CE2 A:Trp174 4.98 V CE A:Lys188 4.88 V NZ A:Lys188 3.72 V ND2 A:Asn214 4.52 V OD1 A:Asn214 4.93 V MG A:Mg501 3.54 V O1 A:Vn4601 1.66 V O2 A:Vn4601 1.76 V O3 A:Vn4601 1.84 V V A:Vn4601 0.00 V O A:Hoh603 3.88 V O A:Hoh605 4.85 V O A:Hoh686 2.12 interactive model: