Vanadium in PDB 2i42: Crystal Structure of Yersinia Protein Tyrosine Phosphatase Complexed with Vanadate, A Transition State Analogue

Enzymatic activity of Crystal Structure of Yersinia Protein Tyrosine Phosphatase Complexed with Vanadate, A Transition State Analogue

All present enzymatic activity of Crystal Structure of Yersinia Protein Tyrosine Phosphatase Complexed with Vanadate, A Transition State Analogue:
3.1.3.48;

Protein crystallography data

The structure of Crystal Structure of Yersinia Protein Tyrosine Phosphatase Complexed with Vanadate, A Transition State Analogue, PDB code: 2i42 was solved by J.Vijayalakshmi, M.A.Saper, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	7.00 / 2.20
*Space group*	P 2₁ 2₁ 2₁
*Cell size a, b, c (Å), α, β, γ (°)*	56.390, 49.660, 100.390, 90.00, 90.00, 90.00
*R / R_free (%)*	17 / n/a

Vanadium Binding Sites:

The binding sites of Vanadium atom in the Crystal Structure of Yersinia Protein Tyrosine Phosphatase Complexed with Vanadate, A Transition State Analogue (pdb code 2i42). This binding sites where shown within 5.0 Angstroms radius around Vanadium atom.
In total only one binding site of Vanadium was determined in the Crystal Structure of Yersinia Protein Tyrosine Phosphatase Complexed with Vanadate, A Transition State Analogue, PDB code: 2i42:

Vanadium binding site 1 out of 1 in 2i42

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Vanadium Binding Sites List in 2i42

Vanadium binding site 1 out of 1 in the Crystal Structure of Yersinia Protein Tyrosine Phosphatase Complexed with Vanadate, A Transition State Analogue

Mono view

Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 1 of Crystal Structure of Yersinia Protein Tyrosine Phosphatase Complexed with Vanadate, A Transition State Analogue within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:V1 b:10.6 occ:1.00	V	A:VO41	0.0	10.6	1.0
	O3	A:VO41	1.6	7.3	1.0
	O2	A:VO41	1.7	8.3	1.0
	O1	A:VO41	1.7	10.0	1.0
	O4	A:VO41	1.9	14.4	1.0
	SG	A:CYS403	2.5	7.0	1.0
	CB	A:CYS403	3.5	7.1	1.0
	NE	A:ARG409	3.7	4.9	1.0
	NH2	A:ARG409	3.7	8.9	1.0
	N	A:GLY408	3.9	6.6	1.0
	N	A:ALA405	3.9	7.0	1.0
	N	A:ARG409	3.9	7.3	1.0
	N	A:ARG404	4.0	8.4	1.0
	OD2	A:ASP356	4.0	6.9	1.0
	O	A:HOH512	4.0	15.9	1.0
	N	A:GLY406	4.1	9.6	1.0
	CZ	A:ARG409	4.2	2.0	1.0
	CB	A:ALA405	4.2	2.0	1.0
	CA	A:GLY408	4.3	2.0	1.0
	O	A:HOH599	4.3	45.3	1.0
	OE1	A:GLN446	4.4	17.1	1.0
	N	A:VAL407	4.4	5.2	1.0
	CB	A:ARG409	4.5	9.2	1.0
	CA	A:ALA405	4.5	8.0	1.0
	C	A:GLY408	4.6	7.4	1.0
	CA	A:CYS403	4.6	7.6	1.0
	CG	A:ASP356	4.7	11.3	1.0
	CG	A:ARG409	4.7	8.4	1.0
	C	A:ALA405	4.7	11.1	1.0
	CA	A:ARG404	4.7	10.3	1.0
	C	A:CYS403	4.8	8.0	1.0
	CB	A:ARG404	4.8	13.3	1.0
	CD	A:ARG409	4.8	3.5	1.0
	CA	A:ARG409	4.8	8.2	1.0
	C	A:ARG404	4.8	7.2	1.0
	CA	A:GLY406	4.9	11.3	1.0
	C	A:VAL407	5.0	5.6	1.0
	CG2	A:VAL407	5.0	6.8	1.0

Reference:

J.Vijayalakshmi, M.A.Saper. Crystal Structure of Yersinia Protein Tyrosine Phosphatase Complexed with Vanadate, A Transition State Analogue To Be Published.

Page generated: Fri Oct 11 19:11:23 2024

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