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  Vanadium
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    PDB 1b8j-2i4e
      1b8j
      1bo6
      1c4g
      1dfl
      1dkt
      1e59
      1h2f
      1idq
      1idu
      1j9l
      1jh7
      1l7v
      1lkx
      1m5o
      1m7g
      1mu9
      1nop
      1qi9
      1qvi
      1qyl
      1rff
      1rfi
      1rg1
      1rg2
      1rgt
      1rgu
      1rh0
      1rpt
      1ruv
      1rxs
      1uzi
      1vfz
      1vnc
      1vne
      1vnf
      1vng
      1vnh
      1vni
      1vom
      1yv3
      1z12
      2azd
      2b9s
      2d1g
      2f43
      2g8h
      2gso
      2hy3
      2i42
      2i4e
    PDB 2jhr-6rsa

Vanadium in the structure of Rat Liver F1-Atpase (pdb 2f43)






The binding sites of Vanadium atom in the structure of Rat Liver F1-Atpase (pdb code 2f43). This binding sites where shown with 5.0 Angstroms radius around Vanadium atom.
The 2f43 structure was solved by C.CHEN, A.K.SAXENA, W.N.SIMCOKE, D.N.GARBOCZI, P.L.PEDERSEN, Y.H.KO, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)20.0-3.0
Space groupH32
a (A)144.567
b (A)144.567
c (A)362.982
alpha (°)90.00
beta (°)90.00
gamma (°)120.00
Rfactor (%)30.6
Rfree (%)32


Vanadium Binding Sites:

Vanadium binding site 1 out of 1 in 2f43


Vanadium binding site 1 out of 1 in 2f43
Click to enlarge
stereopicture of Vanadium binding site 1 out of 1 in 2f43
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Vanadium in the PDB 2f43. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Vanadium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Ala158, B: Gly159, B: Lys162, B: Glu188, B: Arg189, B: Asn257, B: Tyr311, B: Vo4601, B: Mg605, B: Adp604,

conact list:


AtomAtomDistance (A)
VN B:Ala1584.48
VC B:Ala1584.28
VCB B:Ala1584.75
VCA B:Ala1583.83
VN B:Gly1593.85
VCA B:Gly1594.89
VCE B:Lys1624.99
VNZ B:Lys1623.96
VOE2 B:Glu1883.54
VCD B:Glu1884.48
VNH1 B:Arg1894.57
VND2 B:Asn2574.64
VCD1 B:Tyr3114.12
VCE1 B:Tyr3114.42
VCG B:Tyr3114.90
VO1 B:Vo46011.63
VO2 B:Vo46011.67
VO4 B:Vo46012.29
VO3 B:Vo46011.65
VV B:Vo46010.00
VMG B:Mg6053.55
VO3B B:Adp6044.61
VO1B B:Adp6043.02
VPB B:Adp6043.87
VO2B B:Adp6043.91

interactive model:




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