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Vanadium in PDB 1yv3: The Structural Basis of Blebbistatin Inhibition and Specificity For Myosin II

Protein crystallography data

The structure of The Structural Basis of Blebbistatin Inhibition and Specificity For Myosin II, PDB code: 1yv3 was solved by J.S.Allingham, R.Smith, I.Rayment, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 2.00
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 88.106, 145.770, 152.912, 90.00, 90.00, 90.00
R / Rfree (%) 17.3 / 21.5

Other elements in 1yv3:

The structure of The Structural Basis of Blebbistatin Inhibition and Specificity For Myosin II also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Vanadium Binding Sites:

The binding sites of Vanadium atom in the The Structural Basis of Blebbistatin Inhibition and Specificity For Myosin II (pdb code 1yv3). This binding sites where shown within 5.0 Angstroms radius around Vanadium atom.
In total only one binding site of Vanadium was determined in the The Structural Basis of Blebbistatin Inhibition and Specificity For Myosin II, PDB code: 1yv3:

Vanadium binding site 1 out of 1 in 1yv3

Go back to Vanadium Binding Sites List in 1yv3
Vanadium binding site 1 out of 1 in the The Structural Basis of Blebbistatin Inhibition and Specificity For Myosin II


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 1 of The Structural Basis of Blebbistatin Inhibition and Specificity For Myosin II within 5.0Å range:
probe atom residue distance (Å) B Occ
A:V998

b:10.2
occ:1.00
V A:VO4998 0.0 10.2 1.0
O3 A:VO4998 1.6 11.2 1.0
O1 A:VO4998 1.7 11.8 1.0
O2 A:VO4998 1.8 9.2 1.0
O3B A:ADP1000 2.1 10.3 1.0
O4 A:VO4998 2.1 12.0 1.0
PB A:ADP1000 3.2 11.1 1.0
MG A:MG997 3.5 10.7 1.0
O1B A:ADP1000 3.6 11.1 1.0
ND2 A:ASN233 3.8 9.5 1.0
OG A:SER236 3.9 9.9 1.0
OG A:SER181 3.9 10.6 1.0
N A:SER237 4.0 11.9 1.0
N A:GLY182 4.0 10.7 1.0
O A:HOH1454 4.0 11.8 1.0
O A:HOH1053 4.0 11.8 1.0
NZ A:LYS185 4.0 10.0 1.0
CA A:SER181 4.0 8.4 1.0
O2B A:ADP1000 4.1 11.2 1.0
N A:GLY457 4.2 10.9 1.0
CA A:SER236 4.3 10.8 1.0
O A:HOH1276 4.3 10.5 1.0
CB A:SER181 4.4 10.9 1.0
O3A A:ADP1000 4.4 9.2 1.0
O A:SER237 4.4 10.2 1.0
CB A:SER237 4.5 11.5 1.0
C A:SER181 4.6 10.5 1.0
CE A:LYS185 4.6 10.1 1.0
OG A:SER237 4.7 9.6 1.0
CB A:SER236 4.7 10.2 1.0
C A:SER236 4.7 11.6 1.0
CA A:SER237 4.8 10.6 1.0
CA A:SER456 4.8 11.9 1.0
CA A:GLY457 4.9 11.6 1.0
CG A:ASN233 5.0 9.6 1.0
CA A:GLY182 5.0 11.2 1.0

Reference:

J.S.Allingham, R.Smith, I.Rayment. The Structural Basis of Blebbistatin Inhibition and Specificity For Myosin II. Nat.Struct.Mol.Biol. V. 12 378 2005.
ISSN: ISSN 1545-9993
PubMed: 15750603
DOI: 10.1038/NSMB908
Page generated: Thu Oct 29 07:04:33 2020

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