The binding sites of Vanadium atom in the structure of Crystal Structure of the KIF1A Motor Domain Complexed With Adp-Mg-VO4 (pdb code 1vfz). This binding sites where shown with 5.0 Angstroms radius around Vanadium atom.
The 1vfz structure was solved by R.NITTA, M.KIKKAWA, Y.OKADA, N.HIROKAWA, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
| Resolution (A) | 23.4-2.2 | | Space group | P212121 | | a (A) | 41.471 | | b (A) | 51.805 | | c (A) | 156.992 | | alpha (°) | 90.00 | | beta (°) | 90.00 | | gamma (°) | 90.00 | | Rfactor (%) | 21.5 | | Rfree (%) | 24.9 |
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Vanadium binding site 1 out of 1 in 1vfz
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Click to enlarge | 
Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Vanadium in the PDB 1vfz. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Vanadium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Met210, A: Glu212, A: Arg216, A: Gly262, A: Vo4400, A: Hoh546, A: Hoh581, A: Hoh613, A: Hoh625, | conact list:
| Atom | Atom | Distance (A) | | V | O A:Met210 | 3.77 | | V | C A:Met210 | 4.95 | | V | OE1 A:Glu212 | 4.19 | | V | NH1 A:Arg216 | 4.33 | | V | O A:Gly262 | 4.74 | | V | O1 A:Vo4400 | 1.73 | | V | O2 A:Vo4400 | 1.70 | | V | O4 A:Vo4400 | 1.74 | | V | O3 A:Vo4400 | 1.69 | | V | V A:Vo4400 | 0.00 | | V | O A:Hoh546 | 3.64 | | V | O A:Hoh581 | 3.48 | | V | O A:Hoh613 | 4.08 | | V | O A:Hoh625 | 3.40 |
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