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Vanadium in PDB 1ruv: Ribonuclease A-Uridine Vanadate Complex: High Resolution Resolution X-Ray Structure (1.3 A)

Enzymatic activity of Ribonuclease A-Uridine Vanadate Complex: High Resolution Resolution X-Ray Structure (1.3 A)

All present enzymatic activity of Ribonuclease A-Uridine Vanadate Complex: High Resolution Resolution X-Ray Structure (1.3 A):
3.1.27.5;

Protein crystallography data

The structure of Ribonuclease A-Uridine Vanadate Complex: High Resolution Resolution X-Ray Structure (1.3 A), PDB code: 1ruv was solved by J.E.Ladner, B.Wladkowski, L.A.Svensson, L.Sjolin, G.L.Gilliland, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.25
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 29.800, 38.200, 53.200, 90.00, 106.10, 90.00
R / Rfree (%) n/a / n/a

Vanadium Binding Sites:

The binding sites of Vanadium atom in the Ribonuclease A-Uridine Vanadate Complex: High Resolution Resolution X-Ray Structure (1.3 A) (pdb code 1ruv). This binding sites where shown within 5.0 Angstroms radius around Vanadium atom.
In total only one binding site of Vanadium was determined in the Ribonuclease A-Uridine Vanadate Complex: High Resolution Resolution X-Ray Structure (1.3 A), PDB code: 1ruv:

Vanadium binding site 1 out of 1 in 1ruv

Go back to Vanadium Binding Sites List in 1ruv
Vanadium binding site 1 out of 1 in the Ribonuclease A-Uridine Vanadate Complex: High Resolution Resolution X-Ray Structure (1.3 A)


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 1 of Ribonuclease A-Uridine Vanadate Complex: High Resolution Resolution X-Ray Structure (1.3 A) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:V125

b:5.8
occ:0.75
 V A:UVC125 0.0 5.8 0.8
O2V A:UVC125 1.3 5.8 0.8
O1V A:UVC125 1.8 6.3 0.8
O3V A:UVC125 1.9 8.1 0.8
O2' A:UVC125 2.0 9.4 1.0
O3' A:UVC125 2.0 11.3 1.0
C2' A:UVC125 2.7 9.8 1.0
HE2 A:HIS12 2.8 5.2 1.0
HD1 A:HIS119 2.9 7.8 1.0
C3' A:UVC125 3.0 11.8 1.0
HZ3 A:LYS41 3.0 8.9 1.0
HE22 A:GLN11 3.2 8.2 1.0
H A:PHE120 3.3 5.3 1.0
O A:HOH425 3.6 4.9 1.0
ND1 A:HIS119 3.7 7.9 1.0
NE2 A:HIS12 3.7 5.3 1.0
O A:HOH411 3.7 28.0 1.0
C4' A:UVC125 3.8 13.7 1.0
NZ A:LYS41 3.9 8.8 1.0
HA A:HIS119 3.9 6.3 1.0
NE2 A:GLN11 3.9 8.1 1.0
HZ2 A:LYS41 3.9 8.9 1.0
O A:HOH229 4.0 9.3 1.0
C1' A:UVC125 4.0 9.2 1.0
N A:PHE120 4.2 5.2 1.0
HE1 A:HIS12 4.3 5.2 1.0
HE1 A:HIS119 4.3 8.1 1.0
HE21 A:GLN11 4.3 8.1 1.0
HB3 A:PHE120 4.3 6.2 1.0
CE1 A:HIS119 4.4 8.5 1.0
CE1 A:HIS12 4.4 5.6 1.0
O A:PHE120 4.4 7.8 1.0
HZ1 A:LYS41 4.4 8.7 1.0
HE3 A:LYS41 4.5 8.0 1.0
O4' A:UVC125 4.6 10.4 1.0
CG A:HIS119 4.7 7.3 1.0
CA A:HIS119 4.7 6.5 1.0
CD2 A:HIS12 4.8 4.8 1.0
HB2 A:HIS119 4.8 7.5 1.0
CE A:LYS41 4.8 7.9 1.0
CD A:GLN11 4.8 7.5 1.0
HD2 A:HIS12 4.9 4.7 1.0
OE1 A:GLN11 5.0 10.0 1.0
CB A:HIS119 5.0 7.5 1.0
CB A:PHE120 5.0 6.3 1.0

Reference:

J.E.Ladner, B.D.Wladkowski, L.A.Svensson, L.Sjolin, G.L.Gilliland. X-Ray Structure of A Ribonuclease A-Uridine Vanadate Complex at 1.3 A Resolution. Acta Crystallogr.,Sect.D V. 53 290 1997.
ISSN: ISSN 0907-4449
PubMed: 15299932
DOI: 10.1107/S090744499601582X
Page generated: Wed Dec 16 02:30:15 2020

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