Vanadium in the structure of Ribonuclease A-Uridine Vanadate Complex: High Resolution Resolution X-Ray Structure (1.3 A) (pdb 1ruv)

The binding sites of Vanadium atom in the structure of Ribonuclease A-Uridine Vanadate Complex: High Resolution Resolution X-Ray Structure (1.3 A) (pdb code 1ruv). This binding sites where shown with 5.0 Angstroms radius around Vanadium atom. The 1ruv structure was solved by J.E.LADNER, B.WLADKOWSKI, L.A.SVENSSON, L.SJOLIN, G.L.GILLILAND, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 10.0-1.2 Space group P1211 a (A) 29.800 b (A) 38.200 c (A) 53.200 alpha (°) 90.00 beta (°) 106.10 gamma (°) 90.00 Rfactor (%) n/a Rfree (%) n/a Vanadium Binding Sites: Vanadium binding site 1 out of 1 in 1ruv Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Vanadium in the PDB 1ruv. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Vanadium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Gln11, A: His12, A: Lys41, A: His119, A: Phe120, A: Uvc125, A: Hoh229, A: Hoh411, A: Hoh425, conact list: Atom Atom Distance (A) V OE1 A:Gln11 4.98 V CD A:Gln11 4.82 V NE2 A:Gln11 3.94 V HE22 A:Gln11 3.24 V HE21 A:Gln11 4.27 V CD2 A:His12 4.76 V HD2 A:His12 4.92 V NE2 A:His12 3.71 V HE1 A:His12 4.25 V CE1 A:His12 4.37 V HE2 A:His12 2.78 V HZ3 A:Lys41 3.04 V HE3 A:Lys41 4.53 V CE A:Lys41 4.81 V HZ2 A:Lys41 3.95 V NZ A:Lys41 3.92 V HZ1 A:Lys41 4.39 V HB2 A:His119 4.80 V CB A:His119 4.98 V HD1 A:His119 2.91 V CG A:His119 4.72 V CA A:His119 4.73 V HA A:His119 3.93 V HE1 A:His119 4.27 V ND1 A:His119 3.69 V CE1 A:His119 4.35 V N A:Phe120 4.20 V CB A:Phe120 5.00 V HB3 A:Phe120 4.31 V O A:Phe120 4.38 V H A:Phe120 3.34 V V A:Uvc125 0.00 V C3' A:Uvc125 2.95 V O3V A:Uvc125 1.91 V C1' A:Uvc125 4.02 V O1V A:Uvc125 1.78 V O4' A:Uvc125 4.56 V O3' A:Uvc125 2.00 V C2' A:Uvc125 2.72 V C4' A:Uvc125 3.80 V O2V A:Uvc125 1.34 V O2' A:Uvc125 2.00 V O A:Hoh229 3.96 V O A:Hoh411 3.71 V O A:Hoh425 3.65 interactive model: