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Vanadium in PDB 1qyl: Gcatgct + Vanadium

Protein crystallography data

The structure of Gcatgct + Vanadium, PDB code: 1qyl was solved by C.J.Cardin, Y.Gan, J.H.Thorpe, S.C.M.Teixeira, B.C.Gale, M.I.A.Moraes, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 5.80 / 1.00
Space group C 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 22.532, 58.469, 24.148, 90.00, 90.00, 90.00
R / Rfree (%) 14.9 / 18.4

Vanadium Binding Sites:

The binding sites of Vanadium atom in the Gcatgct + Vanadium (pdb code 1qyl). This binding sites where shown within 5.0 Angstroms radius around Vanadium atom.
In total only one binding site of Vanadium was determined in the Gcatgct + Vanadium, PDB code: 1qyl:

Vanadium binding site 1 out of 1 in 1qyl

Go back to Vanadium Binding Sites List in 1qyl
Vanadium binding site 1 out of 1 in the Gcatgct + Vanadium


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 1 of Gcatgct + Vanadium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:V8

b:17.5
occ:0.25
O A:HOH108 2.1 7.8 0.5
O A:HOH124 2.1 8.0 0.2
O A:HOH103 2.2 12.3 0.2
O A:HOH102 4.2 8.9 1.0
OP1 A:DT4 4.6 10.5 1.0
OP2 A:DT4 4.7 12.4 1.0

Reference:

C.J.Cardin, Y.Gan, J.H.Thorpe, S.C.M.Teixeira, B.C.Gale, M.I.A.Moraes. Metal Ion Distribution and Stabilisation of the Dna Quadruplex Structure Formed By D(Gcatgct) To Be Published.
Page generated: Wed Dec 16 02:30:10 2020

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