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Vanadium in PDB 1m7g: Crystal Structure of Aps Kinase From Penicillium Chrysogenum: Ternary Structure with Adp and Aps

Enzymatic activity of Crystal Structure of Aps Kinase From Penicillium Chrysogenum: Ternary Structure with Adp and Aps

All present enzymatic activity of Crystal Structure of Aps Kinase From Penicillium Chrysogenum: Ternary Structure with Adp and Aps:
2.7.1.25;

Protein crystallography data

The structure of Crystal Structure of Aps Kinase From Penicillium Chrysogenum: Ternary Structure with Adp and Aps, PDB code: 1m7g was solved by E.B.Lansdon, I.H.Segel, A.J.Fisher, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.61 / 1.43
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 81.520, 84.320, 137.260, 90.00, 90.00, 90.00
R / Rfree (%) 18 / 20.5

Vanadium Binding Sites:

The binding sites of Vanadium atom in the Crystal Structure of Aps Kinase From Penicillium Chrysogenum: Ternary Structure with Adp and Aps (pdb code 1m7g). This binding sites where shown within 5.0 Angstroms radius around Vanadium atom.
In total 2 binding sites of Vanadium where determined in the Crystal Structure of Aps Kinase From Penicillium Chrysogenum: Ternary Structure with Adp and Aps, PDB code: 1m7g:
Jump to Vanadium binding site number: 1; 2;

Vanadium binding site 1 out of 2 in 1m7g

Go back to Vanadium Binding Sites List in 1m7g
Vanadium binding site 1 out of 2 in the Crystal Structure of Aps Kinase From Penicillium Chrysogenum: Ternary Structure with Adp and Aps


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 1 of Crystal Structure of Aps Kinase From Penicillium Chrysogenum: Ternary Structure with Adp and Aps within 5.0Å range:
probe atom residue distance (Å) B Occ
A:V1301

b:13.4
occ:0.75
V A:AV21301 0.0 13.4 0.8
O2V A:AV21301 1.6 16.3 0.8
O1V A:AV21301 1.6 13.4 0.8
O2' A:AV21301 2.0 18.0 1.0
O3' A:AV21301 2.0 18.4 1.0
C2' A:AV21301 2.9 15.8 1.0
C3' A:AV21301 2.9 15.4 1.0
C1' A:AV21301 3.5 11.6 1.0
O A:HOH2077 3.9 30.7 1.0
C4' A:AV21301 4.1 12.7 1.0
O A:HOH2175 4.2 32.7 1.0
O4' A:AV21301 4.3 14.0 1.0
N9 A:AV21301 4.6 13.5 1.0

Vanadium binding site 2 out of 2 in 1m7g

Go back to Vanadium Binding Sites List in 1m7g
Vanadium binding site 2 out of 2 in the Crystal Structure of Aps Kinase From Penicillium Chrysogenum: Ternary Structure with Adp and Aps


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 2 of Crystal Structure of Aps Kinase From Penicillium Chrysogenum: Ternary Structure with Adp and Aps within 5.0Å range:
probe atom residue distance (Å) B Occ
C:V1306

b:13.9
occ:0.75
V C:AV21306 0.0 13.9 0.8
O2V C:AV21306 1.6 15.4 0.8
O1V C:AV21306 1.7 13.1 0.8
O2' C:AV21306 2.0 18.1 1.0
O3' C:AV21306 2.0 17.1 1.0
C2' C:AV21306 2.8 17.6 1.0
C3' C:AV21306 2.9 15.6 1.0
C1' C:AV21306 3.4 15.8 1.0
O C:HOH2137 4.0 31.4 1.0
C4' C:AV21306 4.1 15.3 1.0
O C:HOH2169 4.2 32.3 1.0
O4' C:AV21306 4.3 15.8 1.0
N9 C:AV21306 4.6 15.9 1.0

Reference:

E.B.Lansdon, I.H.Segel, A.J.Fisher. Ligand-Induced Structural Changes in Adenosine 5'-Phosphosulfate Kinase From Penicillium Chrysogenum. Biochemistry V. 41 13672 2002.
ISSN: ISSN 0006-2960
PubMed: 12427029
DOI: 10.1021/BI026556B
Page generated: Wed Dec 16 02:30:08 2020

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