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Vanadium in PDB 1jh7: Semi-Reduced Inhibitor-Bound Cyclic Nucleotide Phosphodiesterase From Arabidopsis Thaliana

Protein crystallography data

The structure of Semi-Reduced Inhibitor-Bound Cyclic Nucleotide Phosphodiesterase From Arabidopsis Thaliana, PDB code: 1jh7 was solved by A.Hofmann, M.Grella, I.Botos, W.Filipowicz, A.Wlodawer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.29 / 2.40
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 101.140, 101.140, 90.000, 90.00, 90.00, 120.00
R / Rfree (%) 21.4 / 39.9

Vanadium Binding Sites:

The binding sites of Vanadium atom in the Semi-Reduced Inhibitor-Bound Cyclic Nucleotide Phosphodiesterase From Arabidopsis Thaliana (pdb code 1jh7). This binding sites where shown within 5.0 Angstroms radius around Vanadium atom.
In total 2 binding sites of Vanadium where determined in the Semi-Reduced Inhibitor-Bound Cyclic Nucleotide Phosphodiesterase From Arabidopsis Thaliana, PDB code: 1jh7:
Jump to Vanadium binding site number: 1; 2;

Vanadium binding site 1 out of 2 in 1jh7

Go back to Vanadium Binding Sites List in 1jh7
Vanadium binding site 1 out of 2 in the Semi-Reduced Inhibitor-Bound Cyclic Nucleotide Phosphodiesterase From Arabidopsis Thaliana


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 1 of Semi-Reduced Inhibitor-Bound Cyclic Nucleotide Phosphodiesterase From Arabidopsis Thaliana within 5.0Å range:
probe atom residue distance (Å) B Occ
A:V201

b:63.7
occ:1.00
V A:UVC201 0.0 63.7 1.0
O3V A:UVC201 1.7 67.3 1.0
O1V A:UVC201 1.7 67.7 1.0
O2V A:UVC201 1.7 68.7 1.0
O3' A:UVC201 1.7 72.1 1.0
O2' A:UVC201 1.8 69.8 1.0
C3' A:UVC201 2.6 73.0 1.0
C2' A:UVC201 2.7 72.6 1.0
OG1 A:THR44 3.7 43.6 1.0
C4' A:UVC201 3.7 72.3 1.0
C1' A:UVC201 3.8 76.3 1.0
NE2 A:HIS42 4.0 45.7 1.0
OH A:TYR124 4.0 41.4 1.0
NE2 A:HIS119 4.1 42.6 1.0
O4' A:UVC201 4.2 74.0 1.0
OG A:SER121 4.4 43.4 1.0
CB A:THR44 4.6 46.9 1.0
CE1 A:HIS119 4.7 45.7 1.0
CD2 A:HIS42 4.8 47.7 1.0
O A:HOH383 4.9 54.9 1.0
CE1 A:HIS42 4.9 46.7 1.0
CB A:SER121 5.0 38.2 1.0
CZ A:TYR124 5.0 39.5 1.0

Vanadium binding site 2 out of 2 in 1jh7

Go back to Vanadium Binding Sites List in 1jh7
Vanadium binding site 2 out of 2 in the Semi-Reduced Inhibitor-Bound Cyclic Nucleotide Phosphodiesterase From Arabidopsis Thaliana


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 2 of Semi-Reduced Inhibitor-Bound Cyclic Nucleotide Phosphodiesterase From Arabidopsis Thaliana within 5.0Å range:
probe atom residue distance (Å) B Occ
A:V202

b:90.9
occ:0.33
V A:UVC202 0.0 90.9 0.3
O1V A:UVC202 1.7 90.9 0.3
O3V A:UVC202 1.7 90.9 0.3
O2V A:UVC202 1.7 90.0 0.3
O3' A:UVC202 1.7 90.9 0.3
O2' A:UVC202 1.7 90.0 0.3
C3' A:UVC202 2.6 89.5 0.3
C2' A:UVC202 2.7 89.6 0.3
C1' A:UVC202 3.7 89.0 0.3
C4' A:UVC202 3.7 87.9 0.3
O4' A:UVC202 4.2 88.2 0.3

Reference:

A.Hofmann, M.Grella, I.Botos, W.Filipowicz, A.Wlodawer. Crystal Structures of the Semireduced and Inhibitor-Bound Forms of Cyclic Nucleotide Phosphodiesterase From Arabidopsis Thaliana. J.Biol.Chem. V. 277 1419 2002.
ISSN: ISSN 0021-9258
PubMed: 11694509
DOI: 10.1074/JBC.M107889200
Page generated: Thu Oct 29 07:04:13 2020

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