Atomistry » Vanadium » PDB 1b8j-1yv3 » 1j9l
Atomistry »
  Vanadium »
    PDB 1b8j-1yv3 »
      1j9l »

Vanadium in PDB 1j9l: Crystal Structure of Sure Protein From T.Maritima in Complex with Vanadate

Protein crystallography data

The structure of Crystal Structure of Sure Protein From T.Maritima in Complex with Vanadate, PDB code: 1j9l was solved by S.W.Suh, J.Y.Lee, J.E.Kwak, J.Moon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 17.68 / 1.90
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 114.724, 114.724, 77.543, 90.00, 90.00, 120.00
R / Rfree (%) 19.9 / 24.1

Other elements in 1j9l:

The structure of Crystal Structure of Sure Protein From T.Maritima in Complex with Vanadate also contains other interesting chemical elements:

Calcium (Ca) 3 atoms

Vanadium Binding Sites:

The binding sites of Vanadium atom in the Crystal Structure of Sure Protein From T.Maritima in Complex with Vanadate (pdb code 1j9l). This binding sites where shown within 5.0 Angstroms radius around Vanadium atom.
In total 2 binding sites of Vanadium where determined in the Crystal Structure of Sure Protein From T.Maritima in Complex with Vanadate, PDB code: 1j9l:
Jump to Vanadium binding site number: 1; 2;

Vanadium binding site 1 out of 2 in 1j9l

Go back to Vanadium Binding Sites List in 1j9l
Vanadium binding site 1 out of 2 in the Crystal Structure of Sure Protein From T.Maritima in Complex with Vanadate


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 1 of Crystal Structure of Sure Protein From T.Maritima in Complex with Vanadate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:V401

b:84.5
occ:1.00
V A:VO4401 0.0 84.5 1.0
O3 A:VO4401 1.7 80.7 1.0
O2 A:VO4401 1.7 82.5 1.0
O1 A:VO4401 1.7 82.3 1.0
O4 A:VO4401 1.7 82.8 1.0
OD1 A:ASP8 2.9 37.4 1.0
OD1 A:ASN99 3.3 25.8 1.0
OG A:SER107 3.6 20.0 1.0
CA A:CA1301 3.9 33.1 1.0
CG A:ASP8 4.0 35.4 1.0
ND2 A:ASN95 4.0 25.2 1.0
OG1 A:THR109 4.0 24.9 1.0
OD1 A:ASN95 4.0 26.2 1.0
ND2 A:ASN99 4.0 23.2 1.0
N A:GLY108 4.0 19.7 1.0
CG A:ASN99 4.1 23.6 1.0
CA A:SER107 4.1 20.9 1.0
CB A:SER107 4.2 19.0 1.0
CG A:ASN95 4.2 26.3 1.0
OD2 A:ASP8 4.3 35.6 1.0
CB A:SER39 4.4 37.6 1.0
N A:THR109 4.4 21.9 1.0
N A:ALA40 4.4 34.8 1.0
OG A:SER39 4.4 30.8 1.0
CA A:SER39 4.5 37.9 1.0
C A:SER107 4.6 20.1 1.0
CB A:THR109 4.7 23.3 1.0

Vanadium binding site 2 out of 2 in 1j9l

Go back to Vanadium Binding Sites List in 1j9l
Vanadium binding site 2 out of 2 in the Crystal Structure of Sure Protein From T.Maritima in Complex with Vanadate


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 2 of Crystal Structure of Sure Protein From T.Maritima in Complex with Vanadate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:V1401

b:66.6
occ:1.00
V B:VO41401 0.0 66.6 1.0
O3 B:VO41401 1.7 59.9 1.0
O2 B:VO41401 1.7 64.0 1.0
O1 B:VO41401 1.7 65.1 1.0
O4 B:VO41401 1.7 63.9 1.0
OD2 B:ASP8 3.2 37.3 1.0
ND2 B:ASN99 3.5 20.6 1.0
OG B:SER107 3.6 20.2 1.0
CA B:CA1303 3.7 37.2 1.0
OD1 B:ASN95 3.9 21.1 1.0
OD1 B:ASN99 3.9 25.4 1.0
N B:GLY108 3.9 16.1 1.0
ND2 B:ASN95 4.0 23.6 1.0
CG B:ASP8 4.1 33.6 1.0
CA B:SER107 4.1 20.3 1.0
OG1 B:THR109 4.1 25.5 1.0
CG B:ASN99 4.1 23.6 1.0
CG B:ASN95 4.2 25.4 1.0
CB B:SER107 4.2 18.7 1.0
N B:THR109 4.3 19.7 1.0
OD1 B:ASP8 4.4 34.5 1.0
OG B:SER39 4.4 43.3 1.0
CB B:SER39 4.4 49.6 1.0
C B:SER107 4.5 18.8 1.0
N B:ALA40 4.5 45.2 1.0
CA B:SER39 4.6 49.0 1.0
CB B:THR109 4.6 23.6 1.0
CA B:GLY108 4.9 18.4 1.0
O B:HOH1402 5.0 44.2 1.0

Reference:

J.Y.Lee, J.E.Kwak, J.Moon, S.H.Eom, E.C.Liong, J.D.Pedelacq, J.Berendzen, S.W.Suh. Crystal Structure and Functional Analysis of the Sure Protein Identify A Novel Phosphatase Family. Nat.Struct.Biol. V. 8 789 2001.
ISSN: ISSN 1072-8368
PubMed: 11524683
DOI: 10.1038/NSB0901-789
Page generated: Wed Dec 16 02:30:05 2020

Last articles

Zn in 7L3L
Zn in 7KSO
Zn in 7KSR
Zn in 7KTP
Zn in 7LMM
Zn in 7LMK
Zn in 7LLZ
Zn in 7LLF
Zn in 7L0N
Zn in 7LBR
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy