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Vanadium in PDB 1c4g: Phosphoglucomutase Vanadate Based Transition State Analog Complex

Enzymatic activity of Phosphoglucomutase Vanadate Based Transition State Analog Complex

All present enzymatic activity of Phosphoglucomutase Vanadate Based Transition State Analog Complex:
2.7.5.1;

Protein crystallography data

The structure of Phosphoglucomutase Vanadate Based Transition State Analog Complex, PDB code: 1c4g was solved by S.Baranidharan, W.J.Ray Jr., with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 6.00 / 2.70
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 174.420, 174.420, 101.100, 90.00, 90.00, 90.00
R / Rfree (%) 19.2 / 29

Other elements in 1c4g:

The structure of Phosphoglucomutase Vanadate Based Transition State Analog Complex also contains other interesting chemical elements:

Cobalt (Co) 1 atom

Vanadium Binding Sites:

The binding sites of Vanadium atom in the Phosphoglucomutase Vanadate Based Transition State Analog Complex (pdb code 1c4g). This binding sites where shown within 5.0 Angstroms radius around Vanadium atom.
In total only one binding site of Vanadium was determined in the Phosphoglucomutase Vanadate Based Transition State Analog Complex, PDB code: 1c4g:

Vanadium binding site 1 out of 1 in 1c4g

Go back to Vanadium Binding Sites List in 1c4g
Vanadium binding site 1 out of 1 in the Phosphoglucomutase Vanadate Based Transition State Analog Complex


Mono view


Stereo pair view

A full contact list of Vanadium with other atoms in the V binding site number 1 of Phosphoglucomutase Vanadate Based Transition State Analog Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:V563

b:17.5
occ:1.00
 V A:VG1563 0.0 17.5 1.0
OV2 A:VG1563 1.7 24.4 1.0
OV1 A:VG1563 1.7 33.4 1.0
OV3 A:VG1563 1.7 28.6 1.0
O6 A:VG1563 1.9 21.8 1.0
OG A:SER116 2.0 32.1 1.0
CO A:CO562 2.7 2.0 1.0
CB A:SER116 2.9 19.0 1.0
C6 A:VG1563 3.0 27.5 1.0
NZ A:LYS388 3.4 36.5 1.0
NH2 A:ARG22 4.0 16.9 1.0
C5 A:VG1563 4.2 26.3 1.0
ND1 A:HIS117 4.2 22.7 1.0
NE A:ARG292 4.2 15.0 1.0
OD2 A:ASP287 4.2 2.0 1.0
CA A:SER116 4.2 13.4 1.0
OD1 A:ASP291 4.3 13.6 1.0
NZ A:LYS129 4.3 2.0 1.0
N A:HIS117 4.4 16.7 1.0
CE A:LYS388 4.4 19.4 1.0
O5 A:VG1563 4.4 24.4 1.0
NH1 A:ARG22 4.5 10.1 1.0
C4 A:VG1563 4.6 25.5 1.0
OD2 A:ASP289 4.7 15.7 1.0
NH2 A:ARG292 4.7 7.3 1.0
OD1 A:ASP289 4.7 11.2 1.0
CZ A:ARG22 4.8 13.9 1.0
O4 A:VG1563 4.8 28.7 1.0
OD2 A:ASP291 4.8 24.5 1.0
C A:SER116 4.9 11.6 1.0
CZ A:ARG292 4.9 11.9 1.0

Reference:

S.Baranidharan, W.J.Ray Jr.. Structural Relationships at the Active Site of Phos in Analog Complexes To Be Published.
Page generated: Fri Oct 11 11:21:49 2024

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